Publications¶

2021 Published & In Press¶

Journal¶

1. [R A6] Chi Man Wong, Ze Wang, Feng Wan, Agostinho C. Rosa, Tzyy-Ping Jung
   Transferring Subject-Specific Knowledge Across Stimulus Frequencies in SSVEP-based BCIs
   IEEE Transactions on Automation Science and Engineering Vol:18, Issue:2 pp552-563 - Q1 SJR:1.47 h:69 IF: 5.224
   2021 April 15.
   • DOI https://doi.org/10.1109/TASE.2021.3054741
   • https://ieeexplore.ieee.org/document/9354064
2. [R S11] Christophe Domingos, Wenya Nan, Miguel Peralta, Agostinho C. Rosa, José Gomes Pereira
   Session frequency matters in Neurofeedback training of athletes
   Applied Psychophysiology and Biofeedback (APBI) pp1-10 - 2019 Q3 SJR:0.44 h:60 IF:1.116
   2020 August 24, 2021 January 16, Feb 03.
   • DOI https://doi.org/10.1007/s10484-021-09505-3
   • http://link.springer.com/article/10.1007/s10484-021-09505-3
3. [R S15] Inês Esteves, Wenya Nan, Cristiana Alves, Alexandre Calapez, Fernando Melicio, Agostinho C. Rosa
   Explorative study of training intensity in neurofeedback
   Neural Plasticity - 8881059 - Q1 SJR:1.466 h:53
   2020 June, 2021 Jan 31, Feb 18, Mar 15
   • DOI: https://doi.org/10.1155/2021/8881059

1. [R A2] Christophe Domingos, Higino Caldeira, Marco Miranda, Fernando Melicio, Agostinho C. Rosa, José G Pereira
   The influence of noise in the neurofeedback training sessions in student athletes
   Ibero-American Journal of Exercise and Sports Psychology - RIPED-00005-2019-01 - Q2 SJR:0.33
   2019 Dec 16
   • DOI: https://doi.org/
   • https:

Book Chapter¶

1. [B B1] Nuno Leite, Fernando Melício and Agostinho C. Rosa
   A Fast Threshold Acceptance Algorithm for the Examination Timetabling Problem
   2021 Mar 12
   Edited E. Zilla Sinuany-Stern
   Handbook of Operational Research and Memetic Search in Heuristic Exploration. Springer

Conference¶

1. [C C1] Inês Esteves, Ana Fouto, Amparo Ruiz-Tagle, Marta Xavier,Athanasios Vourvopoulos, Nuno Silva, Raquel Gil-Gouveia, Agostinho C. Rosa, Patricia Figueiredo
   Evaluation of ECG-derived respiration signals in simultaneous EEG-fMRI acquisitions
   ISRMRM 2021
   • https:
2. [C C2] Inês Esteves, Ana Fouto, Amparo Ruiz-Tagle, Athanasios Vourvopoulos, Marta Xavier, Nuno Silva, Raquel Gil-Gouveia, Agostinho C. Rosa, Patricia Figueiredo
   Evaluation of surrogate respiration signals derived from ECG acquired during simultaneous EEG-fMRI
   OHBM 2021
   • https:

MSc & PHD Thesis¶

1. [MSc] Maria Margarida Almeirão Brites
   Cuffless Blood Pressure Estimation for Continuous 24/7 Patient Monitoring
   DBE, IST, Jan 27th, 2021

Workshop Biomedical Signal Processing (PDSB-2021) - July 12th - 09:00-13:30¶

1. 09:00 Inês Faria, Sofia Monteiro, Teresa Cunha
   **
2. 09:30 Alexandra Gonçalves, Catarina Carvalho, Mariana Mourão
   **
3. 10:00 Ana Lopes, Daniel Galhoz, Lucia Vicente Gordo
   **
4. 10:30 Afonso Ferreira, Ana Matoso, Inês Arana
   **
5. 11:15 João Saraiva
   "*ICA denoising impact on the Analysis of Visual P300 ERP with ASD subjects*"https://wiki.laseeb.org/attachments/download/130/G7%20ICA%20P300%20Autism.pdf
   "*ICA denoising impact on the Analysis of Visual P300 ERP with ASD subjects*":!!
   :/attachments/download/
6. 11:45 Pedro Osório, Digo Antunes, Diogo Batista
   Cuffless Blood Pressure Estimation
7. 12:15 Diogo Vieira, Diogo Mendes, Leonor Pereira
   CardioBrain: Link between ECG/PPG and EEG
8. 12:45 João Pedro Fernandes
   EEG Analysis for Joint Momentum Control

2020 Published¶

Journal¶

1. [R A1] Tomas Ros*, Stefanie Enriquez-Geppert*, Kymberly Young, James Sulzer, Barry Sterman, Surjo Soekadar, Ranganatha Sitaram, Michael Schönenberg, Frank Scharnowski, Manuel Schabus, Jean Arthur Micoulaud-Franchi, David M. A. Mehler, Joel Lubar, Agostinho C. Rosa, David E. J. Linden, Rene J. Huster, Kerstin Hoedlmoser, John Gruzelier, Thomas Fovet, Niels Birbaumer, Martijn Arns, Robert T. Thibault
   Consensus on the reporting and experimental design of clinical and cognitive-behavioural neurofeedback studies (CRED-nf checklist)
   BRAIN A journal of Neurology Q1 SJR: 5.978 IF: 11.337
   • DOI: https://doi.org/10.1093/brain/awaa009
   • https://academic.oup.com/brain/advance-article/doi/10.1093/brain/awaa009/5807912
2. [R A3] Domingos, C., Alves, C. P., Sousa, E., Agostinho C. Rosa, & Pereira, J. G
   Does neurofeedback training improve performance in athletes?
   NeuroRegulation Vol 7, No 1, pp 8-17, 2020. 2018 Q3 SJR:=0.41 IF: 1.04
   September 01, 2019, February 05, February 11, 2020.
   • DOI: https://doi.org/10.15540/nr.7.1.8
   • https://www.neuroregulation.org/issue/view/1579/133
3. [R A4] Chi Man Wong, Boyu Wang, Ze Wang, Ka Fai Lao, Agostinho C. Rosa and Feng Wan
   Spatial Filtering in SSVEP-based BCIs: Unified Framework and New Improvements
   IEEE - Transaction on Biomedical Engineering - TBME Vol:67, Issue:11 pp 3057-3072 - Q1 SJR:1.256 IF: 4.491
   November 2020.
   • DOI: https://doi.org/10.1109/TBME.2020.2975552
   • https://ieeexplore.ieee.org/document/9006809
4. [R A5] Tiago A S Marçal, José M dos Santos, Agostinho C. Rosa and João M R Cardoso
   OSAS Assessment with Entropy Analysis of High Resolution Snoring Audio Signals
   Biomedical Signal Processing and Control - Q2 SJR:0.711 IF: 2.943
   October 15th, 2019 - April 6th, 2020.
   • DOI https://doi.org/10.1016/j.bspc.2020.101965
   • https://www.sciencedirect.com/science/article/pii/S174680942030121X
5. [R A7] Peng Yufan, Wang Ze, Wong Chi Man, Nan Wenya, Agostinho C. Rosa, Peng Xu, Feng Wan, Yong Hu
   Changes of EEG phase synchronization and EOG signals along the use of SSVEP-based BCI
   Journal of Neural Engineering 17(4) - Q1 SJR:1.647 IF: 4.551
   2019 December 9, 2020 Mar 13, May 01, May 14, 20
   • DOI: 10.1088/1741-2552/ab933e
   • https://iopscience.iop.org/article/10.1088/1741-2552/ab933e
6. [R A8] Nuno Fachada & Agostinho C. Rosa
   generateData — A 2D data generator
   Software Impacts 2020, May 21
   • DOI https://doi.org/10.1016/j.simpa.2020.100017
   • https://www.sciencedirect.com/science/article/pii/S266596382030004X
7. [R A9] Carlos M Fernandes, Nuno Fachada, Juan Laredo, JJ Merelo, Agostinho C. Rosa
   Population Sizing of Cellular Evolutionary Algorithms
   Swarm and Evolutionary Computation Volume 58, November 2020, 100721 - Q1 SJR:1.278 IF: 6.330
   SWEVO_2019_714 - 2019 September 17, 2020 February 06, May 05, May 28, July 14
   • DOI https://doi.org/10.1016/j.swevo.2020.100721
   • https://www.sciencedirect.com/science/article/abs/pii/S2210650220303746?via%3Dihub
8. [R Aa] Nelson Perdigão, Catia Costa, Pedro Pina, João Manuel R.S. Tavares, Agostinho C. Rosa
   Dark Proteome Database: Studies on Intrinsic Disorder
   MDPI High-Throughput 2020, 9(3), 15 - Q3 SJR: 1.04 h:6
   2020 April 27, May 11, 28, June 18, 30
   • DOI https://doi.org/10.3390/ht9030015
   • https://www.mdpi.com/2571-5135/9/3/15
9. [R Ab] Wong, Chi Man; Wan, Feng; Wang, Boyu; Wang, Ze; Nan, Wenya; Lao, Ka Fai; Mak, Peng Un; Vai, Mang I; Agostinho C. Rosa
   Learning Across Multi-Stimulus Enhances Target Recognition Methods in SSVEP-based BCIs
   Journal of Neural Engineering, 17 (2020) 016026 - Q1 SJR:1.647 IF: 4.141
   • DOI: https://doi.org/10.1088/1741-2552/ab2373
   • https://www.ncbi.nlm.nih.gov/pubmed/31112937
10. [R Ac] Chi Man Wong, Ze Wang, Feng Wan, Boyu Wang, Ka Fai Lao, C. L. Philip Chen, Fellow, IEEE, and Agostinho C. Rosa
    Inter-Subject and Intra-Subject Transfer Reduce Calibration Effort for High-Speed SSVEP-based BCIs
    IEEE Transactions on Neural Systems and Rehabilitation Engineering (TNSRE) - 2020-00124 - Q1 2019 SJR: 1.03 h:130 IF: 3.34
    2020 April, Jul 20, Aug 2
    • DOI https://doi.org/10.1109/TNSRE.2020.3019276
    • https://ieeexplore.ieee.org/document/9177172
11. [R Ad] Diogo de Andrade, Nuno Fachada, Carlos M. Fernandes, Agostinho C. Rosa
    Generative Art with Swarm Landscapes
    Entropy 2020, 22(11), 1284 - Q2 SJR:0.53 h:61 IF:2.494
    2020 October 05, 23, November 06;
    • DOI https://doi.org/doi:10.3390/e22111284
    • https://www.mdpi.com/1099-4300/22/11/1284/pdf

Prize

1. [P P1] Christophe Domingos, Andre Antunes, Pedro Prazeres, Ines Esteves, Agostinho C. Rosa
   A potencialidade do treino por Neurofeedback no aumento da variabilidade cardíaca
   Comité Olímpico Portugal, October 2020
   • http://formacao.comiteolimpicoportugal.pt/Pages/Destaque.aspx?dt=AD-5sVnOGUCwYa-RXAASmA
   • http://formacao.comiteolimpicoportugal.pt/PremiosCOP/COP_PFO_TP/file013.pdf

Book Chapter¶

1. [B B1] Cecilia Lopes, Karen Spruyt, Leticia Soster, Agostinho C. Rosa, Christian Guilleminault
   Reduction in Parasympathetic Tone During Sleep in Children With Habitual Snoring
   Frontiers ebook: Integrity of the Autonomic Nervous System in Psychiatric and Neurological Disorders
   Editors: Timo Siepmann, Kristian Barlinn, Ben Min-Woo Illigens

Conference¶

1. [C C1] Maria-Cecilia Lopes, Suely Roizenblatt
   REM SLEEP ANALYSES DURING PUBERTY BY FFT
   Sleep, Volume 43, Issue Supplement_1, April 2020, Page A356
   • https://doi.org/10.1093/sleep/zsaa056.933
2. [C C2] Peng Yufan, Chi Man Wong, Ze Wang, Feng Wan, Agostinho C. Rosa
   Fatigue evaluation in SSVEP-BCIs based on wavelet entropy of EEG
   EMBS - BCI 2020
3. [C C3] Inês Esteves, A. Vourvopoulos, A. Fouto, A. Ruiz-Tagle, Agostinho C. Rosa, P. Figueiredo
   Comparison of individual alpha band features in simultaneous EEG-fMRI relative to EEG acquired outside the MR scanner
   EVBRBM2020

MSc & PHD Thesis¶

1. [PhD] Christophe dos Santos Domingos
   EEG Neurofeedback in Active and Athlete Students: A Methodological Approach
   FMH-UL, Jan 16th, 2020

Workshop Biomedical Signal Processing (PDSB-2020) - June 29th¶

1. Carolina Faria, Catarina Martins, Luísa Costa
   Mindfulness Meditation Classification (Mind-Med)
2. Margarida Ramalho,Gonçalo Salvador, João Simões, Pedro Santos
   Plethysmography HRV versus ECG (Plethys-HRV)
3. Filipa Baltazar, Guilherme Pata, Rita Silva, Vicente Garção
   High RES Mapping Alpha SubRhythms along Sleep (Alpha-Maps)
4. Ali Salloum, Barbara Leikem, Pierre Mougenot
   Characterization of Audio Snores (CA-Snores)
5. Catarina Passarinho, Joana Vera-Cruz, Rafael Silva
   Brain Mapping of Sound Stimulation (BrainMap-SS)
6. Linnea Wivilson, Nina Bach-Gasmo, Carina Rutledal
   CAPS classification and analysis (CAPS-C)
7. Leonor Godinho, Ana Beatriz Raposo, Susana Rodrigues
   Auditory Emotions Evoked Response (AEER)
8. Eric Spiguel, Thomas Carrassi, Gabriela Zapatero
   Heart rate based sleep staging (HR-Staging)

2019 Published¶

Journal¶

1. [R] YuFan Peng, Chi Man Wong, Ze Wang, Feng Wan, Yong Hu, Agostinho C. Rosa
   Fatigue Evaluation Using Multi-Scale Entropy of EEG In SSVEP-Based BCI
   IEEE Access - DATA-ENABLED INTELLIGENCE FOR DIGITAL HEALTH Q1 SJR:0.609
   • DOI: https://doi.org/10.1109/ACCESS.2019.2932503
   • https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=8784197
2. [R] Wenya Nan, Ana Paula Barbosa Dias, Agostinho C. Rosa
   Neurofeedback training for cognitive and motor function rehabilitation in chronic stroke: two case reports
   Frontiers in Neurology - STROKE Q2 SJR:1.185
   • DOI: https://doi.org/10.3389/fneur.2019.00800
   • https: https://www.frontiersin.org/articles/10.3389/fneur.2019.00800/full
3. [R] Carlos M. Fernandes​​, Nuno Fachada, Juan Juilán Merelo, Agostinho C. Rosa
   Steady State Particle Swarm
   Peer J Computer Science 5:e202 - Q1 SJR:0.874
   • DOI: https://doi.org/10.7717/peerj-cs.202
   • https://peerj.com/articles/cs-202/
4. [R] Nelson Perdigao, Agostinho C. Rosa
   Dark Proteome Database: Studies on Dark Proteins
   MDPI High-Throughput 2019 8(2) 7, Volume 8, Issue 2, (June 2019) Q3 SJR:0.25p
   • DOI: https://doi.org/10.3390/ht8020008
   • https://www.mdpi.com/2571-5135/8/2
5. [R] Nuno Leite, Fernando Melício, Agostinho C. Rosa
   A fast simulated annealing algorithm for the examination timetabling problem
   Expert Systems With Applications 122 (2019) 137-151 Q1 SJR:1.19
   • DOI: https://doi.org/10.1016/j.eswa.2018.12.048
   • https://authors.elsevier.com/c/1YMNK3PiGT7hf9
6. [R] Rogerio Largo, Cecilia Lopes, K. Spruyt, Christian Guilleminault, Y. P. Wang, Agostinho C. Rosa
   Visual and Automatic Classification of the Cyclic Alternating Pattern in Sleep EEG
   Brazilian Journal of Medical and Biological Research - BJMBR 2019 52(3) Q2 SJR:0.604 IF:1.048
   • DOI: https://doi.org/10.1590/1414-431X20188059
   • http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-879X2019000300602&lng=en&nrm=iso
7. [R] Rafael S Miranda, Bruno Olivieri, Chiharu Murata, Agostinho C. Rosa, Jose Zamorano, Gerardo Alvarado, Charly Castillo, Javier Moctezuma
   Cyclic alternating pattern in infants with congenital hypothyroidism
   Brain & Development 2019 Jan;41(1):66-71 Q2 SJR:0.706
   • DOI: https://doi.org/10.1016/j.braindev.2018.07.002
   • https://www.ncbi.nlm.nih.gov/pubmed/30037585
8. [R] Cecilia Lopes, Karen Spruyt, Leticia Soster, Agostinho C. Rosa, Christian Guilleminault
   Reduction in Parasympathetic Tone During Sleep in Children With Habitual Snoring
   Frontiers in Neuroscience 12:997, section Autonomic Neuroscience, 10 Jan 2019. Q1 SJR:1.665
   • DOI: https://doi.org/10.3389/fnins.2018.00997
   • https://www.frontiersin.org/articles/10.3389/fnins.2018.00997/full

Book Edition¶

1. [E] Juan Julian Merelo, Fernando Melicio, Jose M. Cadenas, António Dourado, Kurosh Madani, Antonio Ruano, and Joaquim Filipe
   Computational Intelligence - International Joint Conference, IJCCI 2017, Lisboa, Portugal
   Studies in Computational Intelligence vol. xxx, Springer 2019
   • DOI: https://doi.org/

Conference¶

1. [C] Carlos M Fernandes, Agostinho C. Rosa, JLJ Laredo, JJ Merelo
   Genealogical patterns in evolutionary algorithms
   GECCO'19 Proceedings of the Genetic and Evolutionary Computation Conference Companion Pages 283-284
   • DOI: https://doi.org/10.1145/3319619.3321914
   • https:https://dl.acm.org/citation.cfm?id=3319619.3321914
2. [C] Carlos M Fernandes, Juan Laredo, Agostinho C. Rosa
   Event Takeover Values and Emergent Global Patterns in Evolutionary Algorithms
   Genetic and Evolutionary Computation Conference (GECCO-2019)(pap275s1).
   • DOI: https://doi.org/10.1145/3319619.3321914
   • https:https://dl.acm.org/citation.cfm?id=3319619.3321914
3. [C] Teresa Bucho, Gina Caetano, Athanasios Vourvopoulos , Floriana Accoto, Inês Esteves, Agostinho C. Rosa and Patrícia Figueiredo
   Comparison of Visual and Auditory Modalities for Upper-Alpha EEG-Neurofeedback
   TBS2 EMBC 2019.
   • DOI: https://doi.org/10.1109/EMBC.2019.8856671
   • https:https://ieeexplore.ieee.org/document/8856671
4. [C] Wenya Nan, Monica Santos, Vitor Oliveira, Dan Cai, Agostinho C. Rosa
   Neurofeedback with Compact Training Protocol Effects on Chronic Stroke Rehabilitation: A Case Report
   IEEE CIVEMSA 2019.
   • DOI: https://doi.org/
   • https:http://civemsa2019.ieee-ims.org/sites/civemsa19/files/documents/call-docs/CIVEMSA2019-Program-v6_0.pdf

MSc & PHD Thesis¶

1. [MSc] Joana Correia Vaz de Sousa
   Study of a Neurofeedback methodology for treatment of chronic pain in clinical context
   MEBM-DBE-IST-UL, June 16th, 2019
2. [MSc] Marco Paulo Pinheiro Miranda
   Mapeamento das Alterações EEG com Estimulação Auditiva
   MEFT-DF-IST-UL, June 25th, 2019
3. [PhD] Nuno Miguel da Costa de Sousa Leite
   Metaheuristic Algorithms for Examination Timetabling Problems
   PDEEC-IST-UL,November 28th 8:00AM PA3, 2019

ArXiv¶

1. [R] Tomas Ros*, Stefanie Enriquez-Geppert*, Kymberly Young, James Sulzer, Barry Sterman, Surjo
   Soekadar, Ranganatha Sitaram, Michael Schönenberg, Frank Scharnowski, Manuel Schabus, JeanArthur Micoulaud-Franchi, David M. A. Mehler, Joel Lubar, David E. J. Linden, Rene J. Huster,Agostinho C. Rosa,Kerstin Hoedlmoser, John Gruzelier, Thomas Fovet, Niels Birbaumer, Martijn Arns, Robert T. Thibault
   Consensus on the reporting and experimental design of clinical and cognitive-behavioural neurofeedback studies (CRED-nf checklist)
   PsyArXiv Preprint - published in Brain 2020
   • DOI:10.31234/osf.io/nyx84
   • https://psyarxiv.com/nyx84
2. [R] Inês Esteves, Wenya Nan, Cristiana Alves, Alexandre Calapez, Fernando Melicio, Agostinho C. Rosa
   Comparative study of training intensity in neurofeedback
   arXiv:1903.10425v1 [q-bio.NC]
   • https://arxiv.org/abs/1903.10425

Workshop Biomedical Signal Processing (PDSB-2019) - June 21st¶

1. Joao Miguel Ribeiro & Pedro Constantino
   ASNORE - Analysis and Characterization of Snores using audio signals
2. Carlota Santos, Manuel Madeira, Maria Teresa Parreira & Sofia Guterres
   CBI-PM - Computer Brain Interface - Pattern Mining
3. Antonio Goncalves & Francisco Cachado
   T-FCCSS - Time-Frequency classification of continuous sleep stages
4. Kris Unterhauser & Lea Ho Dac
   HRSTAAR - High RES s-t analysis of Alpha Rhythms during sleep
5. Afonso Raposo, Ana Sofia Carmon & Lourenço Rodrigues
   DDEWS - Drowsiness Detection and early warning system
6. Chiara Paratesi, Maria Brites & Susana Medeiros
   SoundStim – EEG Connectivity during sound stimulation
7. Andre Morgado, Clara Latour & Federico Awruch
   ADCDS - Apnea detection and classification during sleep
8. Andre Miranda & José Rafael Correia
   FHRVA - Fast Heart Rate Variability Analysis using ECG
9. Amanda Camila, Mikel Domingo & Sergio Moya Copa
   LMDCES - Limbs Movements Detection and Classification using EMG signals

2018 Published¶

Journal¶

1. [R] Carlos M Fernandes, Daria Migotina, Agostinho C. Rosa
   Brain’s Night Symphony (BraiNSy): A Methodology for EEG Sonification
   IEEE Transactions on Affective Computing 25 June 2018
   (Not included in ISR 2018)
   • DOI:https://doi.org/10.1109/TAFFC.2018.2850008
   • https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=8395039
2. [R] Wenya Nan, Feng Wan, Qi Tang, Chi Man Wong, Boyu Wang, Agostinho C. Rosa
   Eyes-Closed Resting EEG Predicts the Learning of Alpha Down-Regulation in Neurofeedback Training
   Frontiers in Psychology, section Performance Science, 28 August 2018
   (Not included in ISR 2018)
   • DOI:https://doi.org/10.3389/fpsyg.2018.01607
   • https://www.frontiersin.org/articles/10.3389/fpsyg.2018.01607/full
3. [321R] Nuno Leite, Carlos M Fernandes, Fernando Melicio, Agostinho C. Rosa
   A cellular memetic algorithm for the examination timetabling problem
   Computers & Operations Research 94, Applications of Computational Intelligence, ISSN: 0305-0548. (2018), pp. 1-75.
   (Not included in ISR 2018)
   • DOI:https://doi.org/10.1016/j.cor.2018.02.009
   • http://hdl.handle.net/10400.21/8140
4. [R] Nuno Fachada, Agostinho C. Rosa
   micompm: A MATLAB/Octave toolbox for multivariate independent comparison of observations
   Journal of Open Source Software, 3(23), 430, 2018
   (included ISR 2018)
   • DOI:https://doi.org/10.21105/joss.00430
   • http://joss.theoj.org/papers/10.21105/joss.00430

Book Editions¶

1. [E] Juan Julian Merelo, Fernando Melicio, Jose M. Cadenas, António Dourado, Kurosh Madani, Antonio Ruano, and Joaquim Filipe
   Computational Intelligence - International Joint Conference, IJCCI 2016, Porto, Portugal
   Studies in Computational Intelligence vol. 792, Springer 2018
   • http://DOI.org/10.1007/978-3-319-99283-0
   • ISBN: 978-3-319-99282-2 (Print)

Book Chapter¶

1. [314Be] Nuno David, Nuno Fachada, Agostinho C. Rosa
   Verifying and Validating Simulations: Erratum
   Simulating Social Complexity: A Handbook, 2nd edition, Eds. Bruce Edmonds, Ruth Meyer, Chap. 9, pp. 173-204, Springer International Publishing, March 2018
   • DOI:10.1007/978-3-319-66948-9_30
2. [313B] Carlos M Fernandes, Juan L.J. Laredo and Agostinho C. Rosa
   Spatially Structured Evolutionary Algorithms: Degree Distribution, Population Size and Convergence Speed
   Studies in Computational Intelligence 737, M. Ivanović et al. (eds.), Intelligent Distributed Computing XI, pp 15-25, Springer International Publishing
   • DOI:10.1007/978-3-319-66379-1_2
   • https://doi.org/10.1007/978-3-319-66379-1_2

Conference¶

1. [32XC] Carlos M Fernandes, J.L.J. Laredo, J.J. Merelo, Carlos Cotta and Agostinho C. Rosa
   Dynamic Models of Partially Connected Topologies for Population-based Metaheuristics
   Proc IEEE CEC 2018.
2. [32XC] Carlos M Fernandes, Nuno Fachada and Agostinho C. Rosa
   Revisiting Population Structure and Particle Swarm Performance
   Proc GECCO 2018 or Proc IJCCI 2018

MSc & PHD Thesis¶

1. [M] Luis Ramalho
   Uso de Processadores Graficos para Simulacoes Baseadas em Agentes - Heatbugs
   MSc. Thesis MEIC-IST-UL-PT (Thesis, Extended abstract)

2017 Published¶

Journal¶

1. [*R] Carlos M Fernandes
   Sleep Paintings with ants colony
   Art et Sciences 1(1), 2017
   • DOI:10.21494/ISTE.OP.2017.0179
   • https://www.openscience.fr/Peintures-du-sommeil-par-des-fourmis-artificielles
2. [320R] Nelson Perdigão, Agostinho C. Rosa and Seán O’Donoghue
   The Dark Proteome Database
   BioData Mining 10.24 July 2017
   • DOI:10.1186/s13040-017-0144-6
3. [319R] Wenya Nan, Feng Wan, Lanshin Chang, Sio Hang Pun, Mang I Vai, and Agostinho C. Rosa
   An exploratory study of intensive neurofeedback training for schizophrenia
   Behavioural Neurology, vol. 2017, Article ID 6914216, 6 pages, 2017
   • DOI:10.1155/2017/6914216
   • https://www.hindawi.com/journals/bn/aip/6914216/
4. [318R] Nuno Fachada, Vitor Lopes, Rui C. Martins, Agostinho C. Rosa
   cf4ocl: a C framework for OpenCL
   Science of Computer Programming, Vol 143, pp. 9-19, Sep 2017
   • DOI:10.1016/j.scico.2017.03.005
   • http://www.sciencedirect.com/science/article/pii/S0167642317300540
5. [317R] Nuno Fachada, Vitor Lopes, Rui C. Martins, Agostinho C. Rosa
   Parallelization Strategies for Spatial Agent-Based Models
   International Journal of Parallel Programming. Vol. 45, Issue 3, pp. 449-481, June 2017
   • DOI:10.1007/s10766-015-0399-9
   • http://link.springer.com/article/10.1007/s10766-015-0399-9
6. [316R] Nuno Fachada, Vitor Lopes, Rui C. Martins, Agostinho C. Rosa
   Model-independent comparison of simulation output
   Simulation Modelling Practice and Theory, Vol. 72, pp. 131-149, Mar 2017
   • DOI:10.1016/j.simpat.2016.12.013
   • http://www.sciencedirect.com/science/article/pii/S1569190X16302854

Book Edition¶

1. [315E] Kurosh Madani, António Dourado Correia, Agostinho C. Rosa and Joaquim Filipe.
   Computational Intelligence - Revised And Selected Papers Of The International Joint Conference - IJCCI 2015
   Studies In Computational Intelligence vol. 669, Springer, 2017.
   • eBook: 978-3-319-48506-5

Book Chapter¶

1. [314B] Nuno David, Nuno Fachada, Agostinho C. Rosa
   Verifying and Validating Simulations
   Simulating Social Complexity: A Handbook, 2nd edition, Eds. Bruce Edmonds, Ruth Meyer, Chap. 9, pp. 173-204, Springer International Publishing
   • DOI:10.1007/978-3-319-66948-9_9
   • https://doi.org/10.1007/978-3-319-66948-9_9

Conference¶

1. [312C] Alexandre Calapez, Rui C. Martins, Agostinho C. Rosa
   Phase field estimation from single DIC microscopy images using the alternating direction method of multipliers
   Proceedings of CISP-BMEI, pp 1-6, 2017
   • ISBN:978-1-5386-1936-0/17/$31
2. [311C] Nuno Fachada, Vitor Lopes, Rui C. Martins, Agostinho C. Rosa
   Assessing the feasibility of OpenCL CPU implementations for agent-based simulations
   IWOCL 2017 - Proceedings of the 5th International Workshop on OpenCL, Article No. 4, May 2017
   • DOI:10.1145/2909437.2909453
   • http://dl.acm.org/citation.cfm?id=3078174&CFID=935430014&CFTOKEN=13835623
3. [310C] Nuno Fachada, Janir Cruz, MH Herzog, Patricia Figueiredo, Agostinho C. Rosa
   A method for detecting statistically significant differences in EEG data
   OHBM 2017 - Organization for Human Brain Mapping
   • Abstract: https://ww5.aievolution.com/hbm1701/index.cfm?do=abs.viewAbs&abs=3708
   • Poster: https://files.aievolution.com/hbm1701/abstracts/36146/3527_Fachada.pdf
4. [309C] Carlos M Fernandes, Daria Migotina, Rogerio Largo, Agostinho C. Rosa
   Sonification of Sleep EEG
   Proceedings of ARTECH. pp 161-164, 2017
   • DOI:10.1145/3106548.3106614
   • https://dl.acm.org/citation.cfm?id=3106548&picked=prox&CFID=1011423122&CFTOKEN=77621802
5. [*C] Carlos M Fernandes
   Abstracting the Abstract: A Swarm Art Project
   Proceedings of ARTECH, pp 171-174 2017
   • DOI:10.1145/3106548.3106589
   • https://dl.acm.org/citation.cfm?id=3106548&picked=prox&CFID=1011423122&CFTOKEN=77621802
6. [*C] J. J. Merelo, Pedro A. Castillo, Antonio M. Mora, Mario García-Valdez, Carlos Cotta, Carlos M Fernandes
   Self-organized criticality in code repositories
   Proceedings of the 14th European Conference on Artificial Life, pp 545-552, 2017
   • DOI:10.7551/ecal_a_087
   • http://cognet.mit.edu/pdfviewer/journal/ecal_a_087

MSc & PHD Thesis¶

1. [12D] Nelson Perdigão
   Illuminating the Dark Proteome
   PhD. Thesis PDEIC-IST-UL-PT (Hold)
2. [] Inês Esteves
   NeuroFeedback Training Intensity: Implications on EEG Self-regulation
   MSc. Thesis MEBIOM-IST-UL-PT (PDF)
3. [] André Pombeiro
   Disentangling multiple factors shaping the activity of mice prefrontal cortical neurons during Working Memory
   MSc. Thesis MEBIOM-IST-UL-PT (PDF)

2016 (40 = 19R 2E 6B 6C 5PhD 2MSc)¶

Journal¶

1. [*R] P.G.-Sanchez, G.Romero, J.González, A.M.Mora, M.G.Arenas, P.A.Castillo, Carlos M Fernandes, J.J.Merelo
   Studying the effect of population size in distributed evolutionary algorithms on heterogeneous clusters
   Applied Soft Computing, Volume 38, Pages 530–547, January 2016.
   • http://www.sciencedirect.com/science/article/pii/S1568494615006468
2. [306R] Feng Wan, Janir Nuno da Cruz, Wenya Nan, Chi Man Wong, Mang I Vai, and Agostinho C. Rosa
   Alpha neurofeedback training improves SSVEP-based BCI performance
   Journal of Neural Engineering, vol:13, Number:3, pp: 036019, 2016
   • DOI: http://dx.doi.org/10.1088/1741-2560/13/3/036019
3. [305R] Nuno Fachada, Vitor Lopes, Rui C. Martins, and Agostinho C. Rosa
   PerfAndPubTools - Tools for software performance analysis and publishing of results
   Journal of Open Research Software, 4(1): e18
   • DOI: http://dx.doi.org/10.5334/jors.115
4. [304R] Carlos M Fernandes, J.L.J. Laredo, J.J. Merelo, C. Cotta, and A.C. Rosa
   Dynamic Topologies for Particle Swarm
   Transaction on Computational Collective Intelligence XXIV, Vol 9770, LNCS, pp 1-18, 2016
5. [303R] Nuno Fachada Vitor Lopes, Rui C. Martins, and Agostinho C. Rosa
   SimOutUtils - Utilities for analyzing simulation output
   Journal of Open Research Software, 4(1): e38
   • DOI: http://doi.org/10.5334/jors.110
   • https://openresearchsoftware.metajnl.com/articles/10.5334/jors.110/
6. [302R] Nuno Fachada, João Rodrigues, Vitor Lopes, Rui C. Martins, Agostinho C. Rosa
   micompr: An R Package for Multivariate Independent Comparison of Observations
   The R Journal, 8(2): 406-421, 2016
   • https://journal.r-project.org/archive/accepted/fachada-rodrigues-lopes-etal.pdf
7. [] C. Gomes, Patrícia Figueiredo, A. Mayes,
   Priming for novel object associations: neural differences from object item priming and equivalent forms of recognition
   Hippocampus, Vol. 26, No. 4, pp. 472-91, April, 2016
8. [] Rodolfo Abreu, Marco Leite, Leal A, Patrícia Figueiredo
   Objective selection of epilepsy-related independent components from EEG data
   Journal of Neuroscience Methods, Vol. 258, pp. 67-78, January, 2016
   • doi: 10.1016/j.jneumeth.2015.10.003
9. [] J. Cruz, M. Roinishvili, E. Chkonia, M. Herzog
   Higher N1 responses in relatives of schizophrenia patients than controls in visual backward masking
   Journal of Vision 16(12):1223, September, 2016
10. [] Teresa Murta, U. J. Chaudhary, T. Tierney, Andre Dias, M. Leite, D. W. Carmichael, Patrícia Figueiredo, L. Lemieux
    Phase-amplitude coupling and the BOLD signal: A simultaneous intracranial EEG (icEEG)-fMRI study in humans performing a finger-tapping task
    Neuroimage [Epub ahead of print], August , 2016
11. [] Rodolfo Abreu, Sandro Nunes, A. Leal, Patrícia Figueiredo
    Physiological noise correction using ECG-derived respiratory signals for enhanced mapping of spontaneous neuronal activity with simultaneous EEG-fMRI
    Neuroimage [Epub ahead of print], August, 2016
12. [] Teresa Murta, L. Hu, T. Tierney, U. J. Chaudhary, M. C. Walker, D. W. Carmichael, Patrícia Figueiredo, L. Lemieux
    A study of the electro-haemodynamic coupling using simultaneously acquired intracranial EEG and fMRI data in humans
    Neuroimage [Epub ahead of print], August, 2016
13. [] Joana Pinto, J. Jorge, I. Sousa, P. Vilela, Patrícia Figueiredo
    Fourier modeling of the BOLD response to a breath-hold task: Optimization and reproducibility
    Neuroimage, 135:223-31, July, 2016
14. [] Rodolfo Abreu, M. Leite, J. Jorge, F. Grouiller, W. van der Zwaag, A. Leal, Patrícia Figueiredo
    Ballistocardiogram artifact correction taking into account physiological signal preservation in simultaneous EEG-fMRI
    Neuroimage, 135:45-63, July, 2016
15. [] [] A. Leal, J. P. Vieira, R. Lopes, R. G. Nunes, S. I. Gonçalves, F. Lopes da Silva, Patrícia Figueiredo
    Dynamics of epileptic activity in a peculiar case of childhood absence epilepsy and correlation with thalamic levels of GABA
    Epilepsy & Behavior Case Reports 5, pp. 57-65, April, 2016
16. [] L. Saba, N. Dey, A. S. Ashour, S. Samanta, S. S. Nath, S. Chakraborty, João Sanches, D. Kumar, R. T. Marinho, J. S. Suri
    Automated stratification of liver disease in ultrasound: An online accurate feature classification paradigm
    Computer Methods and Programs in Biomedicine, Vol. 130, pp. 118-134, July, 2016
17. [] Ana Santos, T. Mestre, J. Figueiredo, A. S. Ribeiro, J. Paredes, R. Seruca, João Sanches
    Quantification of topological features in cell meshes to explore E-cadherin dysfunction
    Scientific reports 6, May, 2016
18. [] Ana Santos, S. A. Sousa, J. H. Leitão, R. C. Martins, João Sanches, J. S. Suri, A. Giorgetti
    Bioinformatics Applications in Life Sciences and Technologies
    BioMed Research International, May, 2016
19. [] A. S. Ribeiro, F. A. Carvalho, J. Figueiredo, R. Carvalho, T. Mestre, J. Monteiro, A. F. Guedes, M. Fonseca, João Sanches, R. Seruca, N. C. Santos, J. Paredes
    Atomic force microscopy and graph analysis to study the P-cadherin/SFK mechanotransduction signalling in breast cancer cells
    Nanoscale, 2016
    • DOI: 10.1039/C6NR04465D

Book Editions¶

1. [301E] Kurosh Madani, António Dourado Correia, Agostinho C. Rosa and Joaquim Filipe.
   Computational Intelligence - Revised And Selected Papers Of The International Joint Conference, IJCCI 2013, Vilamoura, Portugal
   Studies in Computational Intelligence vol. 613, 2016.%
   • ISBN: 978-3-319-23391-8 (Print) 978-3-319-23392-5 (Online)
2. [300E] Kurosh Madani, António Dourado Correia, Agostinho C. Rosa
   Computational Intelligence - Revised And Selected Papers Of The International Joint Conference, IJCCI 2014, Roma, Italy
   Studies in Computational Intelligence vol. 620, 2016.
   • ISBN: 978-3-319-26391-5 (Print) 978-3-319-26393-9 (Online)

Book Chapters¶

1. [299B] Nuno Leite, Fernando Melício, Agostinho C. Rosa
   A Hybrid Shuffled Frog-Leaping Algorithm for the University Examination Timetabling Problem
   Computational Intelligence, Vol 613, pp 173-188, 2016. Springer International Publishing
2. [298B] Carlos M Fernandes, Juan LJ Laredo, Juan Julián Merelo, Carlos Cotta, Agostinho C. Rosa
   Particle Swarm Optimization with Dynamic Topology and Conservation of Evaluations
   Computational Intelligence, Vol. 620, pp 97-111, 2016. Springer International Publishing
3. [297B] Nuno Leite, Fernando Melício, Carlos M Fernandes, Agostinho C. Rosa
   A Shuffled Complex Evolution Algorithm for the Examination Timetabling Problem
   Computational Intelligence,Vol. 620, pp 151-168, 2016. Springer International Publishing
4. [296B] Nuno Leite, Fernando Melício, Carlos M Fernandes, Agostinho C. Rosa
   Solving the Examination Timetabling Problem with the Shuffled Frog-leaping Algorithm
   LNCS Studies of Computational Intelligence
5. [295B] Carlos M Fernandes, Agostinho C. Rosa, L. J. Laredo J., Cotta C. and Merelo J.
   Performance and Scalability of Particle Swarms with Dynamic and Partially Connected Grid Topologies
   LNCS Studies of Computational Intelligence
6. [294B] Carlos M Fernandes, Agostinho C. Rosa and Merelo J.
   An Asynchronous and Steady State Update Strategy for the Particle Swarm Optimization Algorithm:
   PPSN - Parallel Problem Solving in Nature

Conferences¶

1. [293C] Yufan Peng, Chi Man Wong, Feng Wan, Yong Hu, Agostinho C. Rosa
   Fatigue Evaluation through EEG Analysis Using Multi-scale Entropy in SSVEP-based BCIs
   Proceedings of the Sixth International Brain-Computer Interface Meeting: BCI Past, Present, and Future: 183
   • DOI: http://dx.doi.org/10.3217/978-3-85125-467-9-182
2. [292C] Yufan Peng, Chi Man Wong, Feng Wan, Yong Hu, Agostinho C. Rosa
   Online Optimization of Visual Stimuli for Reducing Fatigue in SSVEP-based BCIs
   Proceedings of theSixth International Brain-Computer Interface Meeting: BCI Past, Present, and Future: 191
   • DOI: http://dx.doi.org/10.3217/978-3-85125-467-9-190
3. [291C] Carlos M Fernandes, JJ Merello, Agostinho C. Rosa
   Asynchronous Steady State Particle Swarm
   Proceedings of GECCO
4. [] Rodolfo Abreu, Sandro Nunes, A. Leal, Patrícia Figueiredo
   ECG-derived respiratory signal for physiological noise correction in simultaneous EEG-fMRI for enhanced mapping of epileptic activity
   Proc. of ISMRM 2016 24th Annual Meeting, Singapore, 2016
5. [] Joana Pinto, P. Vilela, M. Chappell, Patrícia Figueiredo
   Impact of calibration method on the reproducibility of CBF mapping using multiple post-labeling-delay PASL
   Proc. of ISMRM 2016 24th Annual Meeting, Singapore, 2016
6. [] Sandro Nunes, M. Bianciardi, Afonso Dias, L. M. Silveira, L. L. Wald, Patrícia Figueiredo
   Physiological noise model comparison for resting-state fMRI at 7 T
   Proc. of ISBI 2016 - IEEE International Symposium on Biomedical Imaging, Prague, Czech Republic, 2016

MSc & PHD Thesis¶

1. [11D] Nuno Fachada
   Agent-Based Modeling on High Performance Computing Architectures
   PhD. Thesis PDEEC-IST-UL-PT (PDF)
2. [10D] Wenya Nan
   EEG Neurofeedback on Short Term Memory and Peripheral Vision and Prediction of EEG Learning
   PhD. Thesis DEEC-FST-UM-SARM-CN (PDF)
3. [] Marco Leite
   Modelling Human Epileptic Brain Networks
   Ph.D. Thesis, University College London, September, 2016
4. [] Teresa Murta
   Investigation of the neurophysiological correlates of fMRI using simultaneous intracranial and scalp EEG
   Ph.D. Thesis, University College London, June, 2016
5. [] Joao Jorge
   Simultaneous EEG-fMRI at ultrahigh field for the study of human brain function
   Ph.D. Thesis, within the IST-EPFL Joint Doctoral Initiative, February, 2016
6. [15M] Ana Paula Barbosa Dias
   NeuroFeedback em AVC
   MSc. Thesis MTBIOM-DBE-IST-UL-PT (PDF)
7. [14M] Cristiana Alves
   Dynamic Range of NeuroFeedback
   Msc. Thesis MTBIOM-DBE-IST-UL-PT (PDF)

Repositories¶

2015 (36 = 20R 3E 6B 6C 0PhD 1MSc)¶

Journal Paper¶

1. [*R] Seán I O'Donoghue, Kenneth S Sabir, Maria Kalemanov, Christian Stolte, Benjamin Wellmann, Vivian Ho, Manfred Roos, Nelson Perdigão, Fabian A Buske, Julian Heinrich, Burkhard Rost & Andrea Schafferhans
   Aquaria: simplifying discovery and insight from protein structures.
   Nature Methods 12, 98–99 (2015)
   • doi:10.1038/nmeth.3258
2. [*R] Theodoros G. Soldatos, Nelson Perdigão, Nigel P. Brown, Kenneth S. Sabir, Seán I. O’Donoghue
   How to learn about gene function: text-mining or ontologies?.
   Methods, Elsevier, Vol. 74 March 2015, pp 3-15
   • doi:10.1016/j.ymeth.2014.07.004.
3. [290R] Wenya Nan, Xuaoting Qu, Feng Wan, Mang I Vai, Yong Hu, Agostinho C. Rosa
   A Pilot Study on Neurofeedback Training for Enhancement of Balance Ability Measured by Nintendo Wii Balance Board
   Nanotechnology and Precision Engineering, 2015, 13(5): 389-393
   • DOI 10.13494/j.npc.2015037
4. [*R] Graça Almeida, Hugo C. Biscaia, Fernando Melício, Carlos Chastre, José Manuel Fernandes
   In-Plane Displacement and Strain Image Analysis.
   Computer-Aided Civil and Infrastructure Engineering, 00 (2015) 1–13. Publisher Blackwell Publishing
   • ISSN 1093-9687.
5. [*R] Carlos M Fernandes
   Pherographs and Other Hidden Landscapes
   International Journal of Arts and Technology, vol.8, n.2, pp. 132-166, 2015
6. [289R] Wenya Nan, Feng Wan, Mang I Vai, Agostinho C. Rosa
   Resting and initial beta amplitudes predict learning ability in beta/theta ratio neurofeedback training in healthy young adults
   Frontiers of Human Neuroscience, vol:9, Article:00677, December 2015.
   • DOI: http://dx.doi.org/10.3389/fnhum.2015.00677
7. [] Murta T, Leite M, Carmichael D, Figueiredo P, Lemieux L (2015)
   Electrophysiological correlates of the BOLD signal for EEG- informed fMRI.
   Human Brain Mapping 36(1):391-414.
8. [] Jorge J, Grouiller F, Stoermer R, Michel C, Figueiredo P, van der Zwaag W, Gruetter R (2015)
   Simultaneous EEG-fMRI at ultra-high field: artifact prevention and safety assessment.
   NeuroImage 105:132-144.
9. [] Rothlubbers S, Relvas V, Leal A, Murta T, Lemieux L, Figueiredo P (2015)
   Characterization and reduction of the EEG artefact caused by the Helium cooling pump in the MR environment.
   Brain Topogr 28(2):208-20.
10. [] Joao Jorge, Frederic Grouiller, Rolf Gruetter, W. van der Zwaag, Patrícia Figueiredo
    Towards high-quality simultaneous EEG-fMRI at 7 Tesla: detection and reduction of EEG artifacts due to head motion
    Neuroimage, 120:143-53. October
    • doi: 10.1016/j.neuroimage.2015.07.020
11. [] Paulo Rosa, Patrícia Figueiredo, Carlos Silvestre
    On the distinguishability of HRF models in fMRI
    Frontiers in Computational Neuroscience, 9: 54, May, 2015
12. [] Pedro Osorio, Paulo Rosa, Carlos Silvestre, Patrícia Figueiredo
    Stochastic Dynamic Causal Modelling of fMRI data with Multiple-Model Kalman Filters
    Methods of Information in Medicine, 54: 232 - 239, April
    • DOI: 10.3414/ME13-02-0052
13. [] Sabina Zejnilović, João Pedro Gomes
    On a Generalized Metric Dimension with partially known graph topology
    HAL archives ouvertes, April, 2015 - PDF
14. [] S Carvalho, T A Catarino, A M Dias, M Kato, A Almeida, B Hessling, J Figueiredo, F Gärtner, J M Sanches, T Ruppert, E Miyoshi, M Pierce, F Carneiro, D Kolarich, R Seruca, Y Yamaguchi, N Taniguchi, C A Reis and S S Pinho
    Preventing E-cadherin aberrant N-glycosylation at Asn-554 improves its critical function in gastric cancer
    Oncogene (2015), 1–13.
    • doi: 10.1038/onc.2015.225.
15. [] Manya V. Afonso and João M.R. Sanches
    A total variation recursive space-variant filter for image denoising
    Digital Signal Processing, Volume 40, May 2015, Pages 101-116
    • ISSN 1051-2004,
    • http://dx.doi.org/10.1016/j.dsp.2015.02.002.
    • http://www.sciencedirect.com/science/article/pii/S1051200415000457
16. [] Afonso, M.V.; Miguel Sanches, J
    Blind Inpainting using L0 and Total Variation Regularization
    Image Processing, IEEE Transactions on , Vol. 24, No. 7, July 2015
    • doi: 10.1109/TIP.2015.2417505
    • URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7069278&isnumber=4358840
17. [] M. Afonso, J. Miguel Sanches
    Image reconstruction under multiplicative speckle noise using total variation
    Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 200-213
    • ISSN 0925-2312
    • http://dx.doi.org/10.1016/j.neucom.2014.08.073.
18. [] David Afonso, José Seabra, Luís Pedro, J. Fernandes e Fernandes and J. Miguel Sanches
    An Ultrasonographic Risk Score For Detecting Symptomatic Carotid Atherosclerotic Plaques
    Biomedical and Health Informatics, IEEE Journal of , vol.19, no.4, pp.1505-1513, July 2015
    • doi: 10.1109/JBHI.2014.2359236
19. [*R] Nelson Perdigão, Julian Heinrich, Christian Stolte, Kenneth S. Sabir, Michael J. Buckley, Bruce Tabor, Beth Signal, Brian S. Gloss, Christopher J. Hammang, Burkhard Rost, Andrea Schafferhans, and Seán I. O’Donoghue
    Unexpected features of the dark proteome
    PNAS Proceedings of the National Academy of Sciences
    • doi: 10.1073/pnas.1508380112
    • http://www.pnas.org/content/early/2015/11/16/1508380112
20. [288R] Nuno Fachada, Vitor Lopes, Rui C. Martins, Agostinho C. Rosa
    Towards a standard model for research in agent-based modeling and simulation
    PeerJ Computer Science 1:e36
    • https://dx.doi.org/10.7717/peerj-cs.36

Book Edition¶

1. [287E] Kurosh Madani, António Dourado Correia, Agostinho C. Rosa and Joaquim Filipe.
   Computational Intelligence
   Studies in Computational Intelligence, Vol. 577, 2015.
   Revised and Selected Papers Of the International Joint Conference, IJCCI 2012 Barcelona, Spain.
   • ISBN: 978-3-319-11270-1 (Print)
   • ISBN: 978-3-319-11271-8 (Online)
2. [*E] Carlos M Fernandes
   Paisagens Ocultas - Notas sobre Arte, Ciência e Criatividade Distribuída.
   Colecção REFLEX | Reflexões sobre fotografia. Edições TPP, 2015.
   • URL: http://reflex5.theportfolioproject.org/

Book Chapter¶

1. [286B] XT Qu, Q Tang, LM Yang, WY Nan, Janir Nuno da Cruz, Feng Wan, PA Mou, PI Mak, PU Mak, MI Vai, Y Hu, Agostinho C. Rosa
   How Mental Strategy Affects Beta/Theta Neurofeedback Training
   World Congress on Medical Physics and Biomedical Engineering, 2015, pp 1250-1253
2. [285B] W. Nan, X. Qu, L. Yang, F. Wan, Y. Hu, P. Mou, P.I. Mak, P.U. Mak, M.I. Vai, Agostinho C. Rosa
   Beta/Theta Neurofeedback Training Effects in Physical Balance of Healthy People
   World Congress on Medical Physics and Biomedical Engineering, 2015, pp 1213-1216
3. [284B] Limin Yang, Wenya Nan, Xiaoting Qu, Feng Wan, Pui-In Mak, Peng Un Mak, Mang I Vai, Yong Hu, Agostinho C. Rosa
   Beta/theta ratio neurofeedback training effects on the spectral topography of EEG
   IEEE Engineering in Medicine and Biology Society (EMBC), 2015, 4741-4744.
   • DOI: 10.1109/EMBC.2015.7319453
4. [283B] Carlos M Fernandes, JJ Merelo, Agostinho C. Rosa
   A Time-Varying Inertia Weight Strategy for Particles Swarms Based on Self-Organized Criticality
   Computational Intelligence, Vol. 577, 49-62, 2015.
5. [282B] Carlos M Fernandes, AM Mora, JJ Merelo, Agostinho C. Rosa
   Photorealistic Rendering with an Ant Algorithm
   In: Madani, K., Correia, A.D.,Rosa, A., Filipe, J. (eds.) Computational Intelligence, Studies in Computational Intelligence, Vol. 577, 63-77, 2015.
6. [281B] Nuno Leite, Neves, R., Horta, N., Fernando Melício, Agostinho C. Rosa
   Solving a capacitated exam timetabling problem instance using a bi-objective NSGA-II
   In: Madani, K., Correia, A.D., Rosa, A., Filipe, J. (eds.) Computational Intelligence, Studies in Computational Intelligence, Vol. 577, pp. 115–129, 2015.
   Springer International Publishing (2015)
   • http://dx.doi.org/10.1007/978-3-319-11271-8_8

Conference Proceedings¶

1. [] Manya Afonso and Joao Sanches
   Noise Decomposition Using Polynomial Approximation
   7th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA 2015), Santiago de Compostela, Spain, June 17-19
   • ISBN: 978-3-319-19389-2 (Print) 978-3-319-19390-8 (Online)
2. [] Diego Martin-Martinez, Alexandre Domingues, Pablo Casaseca-De-La-Higuera, Carlos Alberola-Lopez and João Sanches
   PPG Beat Reconstruction Based on Shape Models and Probabilistic Templates for Signals Acquired with Conventional Smartphones
   7th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA 2015), Santiago de Compostela, Spain, June 17-19.
   • ISBN: 978-3-319-19389-2 (Print) 978-3-319-19390-8 (Online)
3. [280C] Limin Yang, Wenya Nan, Xiaoting Qu, Feng Wan, Agostinho C. Rosa
   Beta/theta ratio neurofeedback training effects on the spectral topography of EEG
   Int Conf of IEEE Engineering in Medicine and Biology Society (EMBC) 2015, pp 4741-4744
4. [279C] Nuno Leite, Fernando Melício, Agostinho C. Rosa
   Clustering using Cellular Genetic Algorithms
   Proc IJCCI-ECTA Lisboa 2015. pp 366-373.
5. [*C] Nelson Perdigão, T. Soldatos, K. Sabir, S. O Donoghue
   Visual Analytics of Gene Sets Comparison
   Proc. of BDVA 2015 - IEEE International Symposium on Big Data Visual Analytics, 2015, pp 1-2.
   • Doi: 10.1109/BDVA.2015.7314304

Msc and PhD thesis¶

1. [13M] Mónica Isabel Maio dos Santos
   Neurofeedback na reabilitação do Acidente Vascular Cerebral Isquémico
   MSc. Thesis MTBiom-DEB-IST

2014 (34 = 10R 1E 2B 19C 2MSc)¶

Journal Paper¶

1. [278R] Fachada, N., Figueiredo, M.A.T., Lopes, V.V., Martins, R.C., Rosa, A.C.
   Spectrometric differentiation of yeast strains using minimum volume increase and minimum direction change clustering criteria
   Pattern Recognition Letters, Volume 45, pp 55-61, 2014
   doi: http://dx.doi.org/10.1016/j.patrec.2014.03.008 (Software: https://github.com/fakenmc/amvidc)
2. [277R] Wenya Nan, Daria Migotina, Feng Wan, Chin Ian Lou, João Rodrigues, João Semedo, Mang I Vai, Jose Gomes Pereira, Fernando Melicio, Agostinho Claudio Da Rosa
   Dynamic peripheral visual performance relates to alpha activity in soccer players
   Frontiers in human neuroscience,2014, 8:913.
   • DOI: https://doi.org/10.3389/fnhum.2014.00913
   • https://www.frontiersin.org/articles/10.3389/fnhum.2014.00913/full
3. [276R] Feng Wan, Wenya Nan, Mang I Vai, Agostinho C. Rosa
   Resting alpha activity predicts learning ability in alpha neurofeedback
   Frontiers in human neuroscience,2014, 8:500.
   • Doi: 10.3389/fnhum.2014.00500
   • https://www.frontiersin.org/articles/10.3389/fnhum.2014.00500/full
4. [275R] C.M. Fernandes, A.M. Mora, J.J. Merelo, A.C.Rosa
   KANTS: A Stigmergic Ant Algorithm for Cluster Analysis and Swarm Art
   IEEE Transactions on Systems, Man and Cybernetics, (2014), Vol.4, issue 66, pp 843-856.
5. [*R] J.L.J. Laredo, C.M. Fernandes, B. Dorronsoro, F. Guinand, P. Bouvry
   The Sandpile Scheduler: How self-organized criticality may lead to dynamic load-balancing
   Journal of Cluster Computing, Springer, pp. 191-204, 2014.
6. [*R] J.L.J. Laredo, P. Bouvry, D.L. González, F. Fernandéz de la Vega, M.G. Arenas, J.J. Merelo, C.M. Fernandes
   Designing Robust Volunteer-based Evolutionary Algorithms
   Genetic Programming and Evolvable Machines, Springer, Vol. 15, No. 3, pp 221-244, 2014. DOI:10.1007/s10710-014-9213-5.
7. [*r] Nuno Pessanha Santos, Fernando Melício, Vctor Lobo, Alexandre Bernardino
   A Ground Based Vision System for UAV Pose Estimation
   International Journal of Robotics and Mechatronics ISSN: 2288-5889. To appear.
8. [] Jorge JP, van der Zwaag W, Figueiredo P (2014)
   EEG-fMRI integration for the study of human brain function
   NeuroImage 102: 24–34.
9. [] Sousa I, Vilela P, Figueiredo P (2014)
   Reproducibility of hypocapnic cerebrovascular reactivity measurements using BOLD fMRI in combination with a paced deep breathing task
   NeuroImage 98:31-41.
10. [] Sousa I, Vilela P, Figueiredo P (2014)
    Reproducibility of the quantification of arterial and tissue contributions in multiple post-labeling delay ASL
    J Magn Reson Imaging 40(6):1453-62.

Book Edition¶

1. [274E] Kurosh Madani, António Dourado Correia, Agostinho C. Rosa and Joaquim Filipe. Computational Intelligence, Revised And Selected Papers Of The International Joint Conference, IJCCI 2012, Barcelona, Spain. Studies In Computational Intelligence, Volume 577, 2015. DOI: 10.1007/978-3-319-11271-8.

Book Chapter¶

1. [273B] CM Fernandes, JLJ Laredo, JJ Merelo, C Cotta, R Nogueras, AC Rosa, Shuffle and Mate: A Dynamic Model for Spatially Structured Evolutionary Algorithms, Parallel Problem Solving from Nature–PPSN XIII, 50-59, 2014.
2. [272B] Carlos M. Fernandes, Agostinho C. Rosa, Juan L. J. Laredo, Carlos Cotta and J. J. Merelo. Performance and Scalability of Particle Swarms with Dynamic and Partially Connected Grid Topologies. LCNS Transaction of Computational Collective Intelligence Journal, Springer (2014).

Conference Proceedings¶

1. [271C] C Fernandes, JL Jimenez Laredo, JJ Merelo, C Cotta, A.C. Rosa, Dynamic and Partially Connected Ring Topologies for Evolutionary Algorithms with Structured Populations, The European Conference on the Applications of Evolutionary Computation, EvoStar 2014. http://hdl.handle.net/10993/16892
2. [*C] J.L.J. Laredo, N. Steinbjorn, D. Grégoire, B. Pascal, C.M. Fernandes, Cooperative Selection: Improving Tournament Selection via Altruism, 14th European Conference on Evolutionary Computation in Combinatorial Optimisation, EvoStar, 2014.
3. [270C] C.M. Fernandes, J.L.J. Laredo, J.J. Merelo, C. Cotta, A.C. Rosa, Particle Swarms with Dynamic Topologies and Conservation of Function Evaluations, Proceedings of the Evolutionary Computation Theory and Applications (ECTA), to appear, 2014.
4. [269C] CM Fernandes, AC Rosa, JLJ Laredo, C Cotta, JJ Merelo, A study on time-varying partially connected topologies for the particle swarm, Evolutionary Computation (CEC), 2013 IEEE Congress on, pp 2450-2456.
5. [*C] L. Herrera, A. Guillén, H. Pomares, I. Rojas, O. Valenzuela, A. Mora and C.M. Fernandes, Stacked Sequential Learning and Time Series Prediction Approaches for Sleep Stage Classification from Polysomnography Data, to appear in ITISE 2014.
6. [268C] N. Leite, F. Melício and A. C. Rosa. A Shuffled Complex Evolution Based Algorithm for Examination Timetabling - Benchmarks and a New Problem Focusing Two Epochs. Proceedings of the 6th International Joint Conference on Computational Intelligence (IJCCI-ECTA 2014), pp. 112-124. SciTePress (2014), http://dx.doi.org/10.5220/0005164801120124
7. [*C] Graça Almeida, Fernando Melício, José Fonseca, Block Matching Algorithms for Load Test Evaluation, Proceedings of the Eighth International Conference on Engineering Computational Technology, Ed. B.H.V. Topping, Civil-Comp Press, Stirlingshire Scotland, 2012. DOI:10.4203/ccp.100.57
8. [*C] César Coutinho, Fernando Melício, Autonomous Guidance System for Robot with Differential Locomotion, Conference Proceedings, ICCARVE 2014: International Conference on Control, Automation, Robotics and Vision Engineering, Stockholm, Sweden, 2014. ISSN: 1307-6892
9. [*C] César Coutinho, Fernando Melício, Road Lane Detection for Autonomous Robot Guidance, 2014 IEEE International Conference on Autonomous Robot Systems and Competitions, ICARSC, Espinho, Portugal. DOI: 10.1109/ICARSC.2014.6849802
10. [*C] César Coutinho, Fernando Melício, Autonomous Guidance System for Robot with Differential Locomotion, Conference Proceedings, ICCARVE 2014: International Conference on Control, Automation, Robotics and Vision Engineering, Stockholm, Sweden, 2014. ISSN: 1307-6892
11. [*C] Nuno Pessanha Santos, Fernando Melício, Vctor Lobo, Alexandre Bernardino, A Ground Based Vision System for UAV Pose Estimation, Conference Proceedings, 10th International Conference on Intelligent Unmanned Systems, Montreal, Canada, Setembro 2014.
12. [] Leitão AC, Francisco AP, Abreu R, Figueiredo P, Wald LL, Silveira LM (2014)
    Large functional connectivity network analysis of whole-brain high-resolution resting-state fMRI.
    Fourth Biennial Conference on Resting State / Brain Connectivity, September 2014, Cambridge, US [Poster presentation]
13. [] Rodrigues J, Figueiredo P, Andrade A (2014)
    Applicability of lag-based measures to fMRI: influence of experimental parameters.
    Proc. 20th Annual Meeting of the Organization for Human Brain Mapping (HBM 2014), June 2014, Hamburg, Germany. [Poster presentation]
14. [] Nunes RG, Murta T, Abreu R, Leal A, Figueiredo P (2014)
    Structural and functional mapping of the seizure propagation pathway in a hypothalamic hamartoma.
    Proc. 20th Annual Meeting of the Organization for Human Brain Mapping (HBM 2014), June 2014, Hamburg, Germany. [Poster presentation]
15. [] Abreu R, Leite M, Leal A, Figueiredo P (2014)
    Objective template-based selection of EEG ICA epilepsy-related components.
    Proc. 20th Annual Meeting of the Organization for Human Brain Mapping (HBM 2014), June 2014, Hamburg, Germany. [Poster presentation]
16. [] Pinto J, Sousa I, Vilela P, Figueiredo P (2014)
    Dynamics of the BOLD response to breath-holding and paced deep breathing.
    Proc. 20th Annual Meeting of the Organization for Human Brain Mapping (HBM 2014), June 2014, Hamburg, Germany. [Poster presentation]
17. [] Murta T, Figueiredo P, Chaudary U, Carmichael DW, Lemieux. L (2014)
    Studying the ECoG PAC strength - BOLD coupling in humans using simultaneously recorded data.
    Proc. 20th Annual Meeting of the Organization for Human Brain Mapping (HBM 2014), June 2014, Hamburg, Germany. [Poster presentation]
18. [] Jorge J, Grouiller F, Stoermer R, Michel C, Figueiredo P, van der Zwaag W, Gruetter R (2014)
    An optimized setup for simultaneous EEG-fMRI at ultra-high field in a head-only 7T scanner.
    Proc. 22nd Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2014), May 2014, Milan, Italy. [Poster presentation]
19. [] Jorge J, Figueiredo P, van der Zwaag W (2014)
    Intra and cross-modal negative BOLD responses in grey matter regions and large draining veins under contrast-varying visual stimulation.
    Proc. 22nd Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2014), May 2014, Milan, Italy. [Poster presentation]

Thesis¶

1. [] Sandro Nunes
   MSc Thesis MEBiom
2. [] João Abrantes
   MSc Thesis MEBiom

Software¶

1. [3S] cf4ocl - C Framework for OpenCL: http://fakenmc.github.io/cf4ocl/
2. [2S] amvidc - Data clustering algorithm based on agglomerative hierarchical clustering (AHC) which uses minimum volume increase (MVI) and minimum direction change (MDC) clustering criteria: https://github.com/FakenMC/amvidc/
3. [1S] generateData - Generates 2D data for clustering*: https://github.com/FakenMC/generateData/

User guides¶

1. [3U] cf4ocl user guide and API, N Fchada
2. [2U] amvidc user guide, N Fachada
3. [1U] generateData user guide, N Fachada

2013 (58 = 13R 1E 9B 32C 1PhD 2 MSc) - Published and accepted¶

Journal Paper¶

1. [] Leite M, Leal A and Figueiredo P (2013) Transfer function between EEG and BOLD signals of epileptic activity. Front. Neur. doi: 10.3389/fneur.2013.00001 [Epub ahead of print].
2. [] Pimentel M, Vilela P, Sousa I, Figueiredo P (2013) Localization of the hand motor area by ASL and BOLD fMRI. Human Brain Mapping 34(1):96-108.
3. [] Sousa I, Vilela P, Figueiredo P (2013) Reproducibility of the quantification of arterial and tissue contributions in multiple post-labeling delay ASL. Journal of Magnetic Resonance Imaging Nov 13. doi: 10.1002/jmri.24493. [Epub ahead of print].
4. [] Jorge JP, van der Zwaag W, Figueiredo P (2013) EEG-fMRI integration for the study of human brain function. NeuroImage. May 31 [Epub ahead of print].
5. [] Jorge JP, Figueiredo P, van der Zwaag W, Marques JP (2013) Signal fluctuations in fMRI data acquired with 2D-EPI and 3D-EPI at 7 Tesla. Magn. Reson. Imag. 31:212–220.
6. [267R] L. J. Herrera, C. M. Fernandes, A. M. Mora, D. Migotina, R. Largo, A. Guillen, A. C. Rosa. Combination of Heterogeneous EEG Feature Extraction Methods and Stacked Sequential Learnings for Sleep Stage Classification. International Journal of Neural Systems, Volume No.23, Issue No. 3. pp 1350012 (20 pages) 2013.
   • DOI:10.1142/S0129065713500123
   • http://www.worldscientific.com/doi/abs/10.1142/S0129065713500123?journalCode=ijns
7. [266R] Wenya Nan, Feng Wan, Chin Ian Lou, Mang I Vai, Agostinho C. Rosa Individual alpha Neurofeedback training effect on peripheral vision. Applied Phychophysiology and BioFeedback Volume 38, Issue 4 (2013), Page 285-291. Pre-print "DOI 10.1007/s10484-013-9233"
   • doi:10.1007/s10484-013-9233-6
   • http://www.springerlink.com/openurl.asp?genre=article&id=doi:10.1007/s10484-013-9233-6
8. [265R] C.M. Fernandes, J.L.J. Laredo , J.J. Merelo, A.C.Rosa. The Sandpile Mutation Genetic Algorithm: a Study on a Diversity-Oriented Mutation Operator for Dynamic Problems Inspired by Self-Organized Criticality. Applied Intelligence. Vol. 39, Nº2, Springer, pp.279-306, 2013.
   • DOI: 10.1007/s10489-012-0413-5
   • https://link.springer.com/article/10.1007/s10489-012-0413-5
9. [*R] J.J. Merelo, A.M. Mora, C.M. Fernandes, A.I. Esparcia-Alcázar, Designing and Testing a Pool-based Evolutionary Algorithm. Natural Computing, Vol. 12, Nº2, pp. 149-162, June 2013
   • https://link.springer.com/article/10.1007/s10489-012-0413-5
10. [*R] J.L.J. Laredo, P. Bouvry, D.L. González, F. Fernandéz de la Vega, M.G. Arenas, J.J. Merelo, C.M. Fernandes, Designing Robust Volunteer-based Evolutionary Algorithms, (Janeiro 2014) no Genetic Programming and Evolvable Machines, Springer
11. [*R] J.L.J. Laredo, C.M. Fernandes, B. Dorronsoro, F. Guinand, P. Bouvry, The Sandpile Scheduler: How self-organized criticality may lead to dynamic load-balancing, (Outubro 2013) Journal of Cluster Computing, Springer (http://link.springer.com/article/10.1007/s10586-013-0328-x). Accepted.
12. [264R] C.M. Fernandes, A.M. Mora, J.J. Merelo, A.C.Rosa, KANTS: A Stigmergic Ant Algorithm for Cluster Analysis and Swarm Art, (Julho 2013) no IEEE Transactions on Systems, Man and Cybernetics.
    • doi: 10.1109/TCYB.2013.2273495
    • https://pubmed.ncbi.nlm.nih.gov/23912505/
13. [263R] Carlos M. Fernandes, Agostinho C. Rosa, Juan L. J. Laredo, Carlos Cotta and J. J. Merelo.
    Performance and Scalability of Particle Swarms
    • https://scitepress.org/papers/2013/45586/45586.pdf

Book Edition¶

1. [262E] Madani K, Correia A.D., Rosa A, Filipe J. (eds) (2013) Computational Intelligence, Springer, Series: Studies in Computational Intelligence, Vol. 465, 1st Edition, Hardcover ISBN: 978-3-642--35637-7 (Print) 978-3-642-35638-4 (Online).

Book Chapter¶

1. [261B] Nuno Leite, Rui Neves, Nuno Horta, Fernando Melıcio and Agostinho C. Rosa.(2013) Solving an Uncapacitated Exam Timetabling Problem Instance using a Hybrid NSGA-II. Studies in Computational Intelligence, Springer 2013. (Accepted 2012)
2. [260B] Carlos Fernandes, Juan Merelo, Agostinho C. Rosa. (2013) Pherogenic Drawings: Generating Colored 2-Dimensional Abstract Representations of Sleep EEG with the KANTS Clustering Algorithm. Studies in Computational Intelligence, Springer 2013. (Accepted 2012).
3. [259B] Carlos Fernandes, Juan Merelo, Agostinho C. Rosa. (2013) Using Self-Organized Criticality for Adjusting the Parameters of a Particle Swarm Optimization Algorithm. Studies in Computational Intelligence, Springer, 2013. (Accepted 2012).
4. [*B] J.L.J. Laredo, B. Dorronsoro, C.M. Fernandes, J.J. Merelo, P. Bouvry, “Oversized Populations and Cooperative Selection: Dealing with Massive Resources in Parallel Infrastructures,” LION 7, 2013. (http://lion.disi.unitn.it/intelligent-optimization/LION7/Laredo-Dorronsoro-Fernandes-Merelo-Bouvry_paper85.pdf)
5. [258B] J.M.S. Pascualvaca, C.M. Fernandes, A. Guillen, A.M. Mora, R. Largo, A.C. Rosa L.J. Herrera, Sleep Stage Classification Using Advanced Intelligent Methods, Advances in Computational Intelligence, LNCS 7902, Springer, July 2013, pp 604-612 (http://link.springer.com/chapter/10.1007%2F978-3-642-38679-4_61)
6. [257B] Carlos Fernandes, Juan Laredo, Juan Julian Merelo, Carlos Cotta and Agostinho C. Rosa. Adapting the Bak-Sneppen Model to a Dynamic and Partially Connected Grid of Hierarchical Species. In Advances in Artificial Life, P Lio, O Miglino, G Nicosia, S Nolfi, M Pavone (eds), pp 523-530. MIT Press, Ebook ISBN: 9780262317092
7. [256B] C.M. Fernandes, J.J. Merelo, A.C.Rosa, A Time-Varying Inertia Weight Strategy for Particles Swarms Based on Self-Organized Criticality, (Fevereiro 2012) no Studies in Computational Intelligence (IJCCI 2012 revised selected papers), Springer-Verlag 2014. Accepted.
8. [255B] C.M. Fernandes, A.M. Mora, J.J. Merelo, A.C.Rosa, Photorealistic rendering with an Ant Algorithm, (Fevereiro 2012) no Studies in Computational Intelligence (IJCCI 2012 revised selected papers), Springer-Verlag 2014. Accepted.
9. [254B] Nuno Leite, Fernando Melício and Agostinho C. Rosa. A Hybrid Shuffled Frog-Leaping Algorithm for
   the University Examination Timetabling Problem. (October de 2013) no “Studies in Computational Intelligence”, (IJCCI 2013 revised selected papers), LNCS, Springer-Verlag 2015. http://www.springer.com/computer/lncs?SGWID=0-164-6-793341-0

Conference Paper¶

1. [253C] Tiago Marçal, José Basilio Simões, José Moutinho dos Santos, Agostinho C. Rosa and João Cardoso. Snoring analysis on full night recordings based in the energy and entropy in PSG basal studies. Int Conference of Bio-inspired Systems and Signal Processing, Biosignals 2013, pp 221-227, 2013.
2. [252C] Joao Rodrigues, Wenya Nan, Agostinho C. Rosa. EEG Biofeedback and Brain Computer Interface in Games. Proc VJ 2013.(http://vj2013.dei.uc.pt/wp-content/uploads/2013/09/vj2013_submission_25.pdf)
3. [251c] Carlos Fernandes, Carlos Cotta, Juan Jimenez, J Merelo, Agostinho C. Rosa. Dynamic and Partially Connected Grid Topologies for Particle Swarms. GECCO 2013
4. [250C] C.M. Fernandes, A.M. Mora, J.J. Merelo, A.C. Rosa. Foto-renderización com Inteligencia de Enjambre. MAEB 2013
5. [249C] Carlos M. Fernandes, Juan L.J. Laredo, Juan J. Merelo, Carlos Cotta and Agostinho C. Rosa. A Study on Time-varying Partially Connected Topologies for the Particle Swarm. IEEE CEC 2013
6. [248C] Carlos Fernandes, Antonio Mora, Juan Merelo and Agostinho C. Rosa. Photo Rendering with Swarms: From Figurative to Abstract Pherogenic Imaging. IEEE SSCI 2013.
7. [247C] Fernandes C., C. Rosa A., L. J. Laredo J., Cotta C. and J. Merelo J. (2013). Performance and Scalability of Particle Swarms with Dynamic and Partially Connected Grid Topologies. In Proceedings of the 5th International Joint Conference on Computational Intelligence, pages 47-55. DOI: 10.5220/0004558600470055
8. [246C] C.M. Fernandes, J.L.J. Laredo, J.J. Merelo, C. Cotta, A.C. Rosa, Adapting the Bak-Sneppen Model to a Dynamic and Partially Connected Grid of Hierarchical Species, Proc. of European Congress on Artificial Life - ECAL 2013, September 2013. (http://mitpress.mit.edu/sites/default/files/titles/content/ecal13/ch076.html)
9. [245C] C.M. Fernandes, A.M. Mora, J.J. Merelo, A.C. Rosa, Foto-renderización com Inteligencia de Enjambre, in Proc. of the IX Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados - MAEB 2013, September 2013, pp. 209-218 (http://bioinspired.dacya.ucm.es/maeb2013/)
10. [244C] J.M.S. Pascualvaca, C.M. Fernandes, A. Guillen, A.M. Mora, R. Largo, A.C. Rosa L.J. Herrera, Sleep Stage Classification Using Advanced Intelligent Methods, Advances in Computational Intelligence, LNCS 7902, Springer, July 2013, pp 604-612 (http://link.springer.com/chapter/10.1007%2F978-3-642-38679-4_61)
11. [*C] P. García Sánchez, M. García-Arenas, A.M. Mora, P. Castillo, C.M. Fernandes, J.G. Peñalver, G.R. López, J.J. Merelo, P. de Las Cuevas. Desarrollo de servicios para una Arquitectura Orientada a Servicios para Algoritmos Evolutivos. MAEB 2013
12. [*C] J.L.J. Laredo, B. Dorronsoro, C.M. Fernandes, J.J. Merelo, P. Bouvry. Oversized Populations and Cooperative Selection: Dealing with Massive Resources in Parallel Infrastructures. LION 7 (http://lion.disi.unitn.it/intelligent-optimization/LION7/Laredo-Dorronsoro-Fernandes-Merelo-Bouvry_paper85.pdf)
13. [*C] P. García Sánchez, M. García-Arenas, A. M. Mora, P. Castillo, C.M. Fernandes, J. G. Peñalver, G. R. López, J.J. Merelo, P. de Las Cuevas, Desarrollo de servicios para una Arquitectura Orientada a Servicios para Algoritmos Evolutivos, Proc.s of the IX Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados - MAEB 2013, September 2013, pp. 633-642 (http://bioinspired.dacya.ucm.es/maeb2013/)
14. [243C] C.M. Fernandes, J.L.J. Laredo, J.J. Merelo, C. Cotta, A.C. Rosa, A Study on Time-Varying Partially Connected Topologies for Particle Swarms, Proc. of the 2013 IEEE Congress on Evolutionary Computation (CEC 2013), IEEE Press, June 2013, pp. 2450-2456 (http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6557863&url=http%3A%2F%2Fieeexplore.ieee.org%2Fiel7%2F6552460%2F6557545%2F06557863.pdf%3Farnumber%3D6557863)
15. [242C] C.M. Fernandes, A.M. Mora, J.J. Merelo, C. Cotta, A.C. Rosa, Photo rendering with Swarms, Proc. of the 2013 IEEE Symposium on Computational Intelligence for Creativity and Affective Computing, IEEE Press, April 2013, pp. 32-39 (http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6595218)
16. [241C] C.M. Fernandes, J.L.J. Laredo, J.J. Merelo, C. Cotta, A.C. Rosa, Partially Connected Topologies for Particle Swarms, Proc. of the 15th Genetic and evolutionary computation conference, ACM, July 2013, pp.11-12 (http://dl.acm.org/citation.cfm?id=2464586).
17. [*C] J.L.J. Laredo, B. Dorronsoro, C.M. Fernandes, J.J. Merelo, P. Bouvry, Oversized Populations and Cooperative Selection: Dealing with Massive Resources in Parallel Infrastructures, Proc. of Learning and Intelligent Optimization 7, January 2013, pp 444-449 (http://link.springer.com/chapter/10.1007/978-3-642-44973-4_47)
18. [240C] Leite N., Melício F. and Rosa A. (2013). Multiobjective Memetic Algorithms applied to University Timetabling Problems. In Doctoral Consortium, pp 29-37. DOI: 10.5220/0004657400290037
19. [239C] Leite N., Melício F. and Rosa A. (2013). Solving the Examination Timetabling Problem with the Shuffled Frog-leaping Algorithm. In Proceedings of the 5th International Joint Conference on Computational Intelligence, pages 175-180. DOI: 10.5220/0004636001750180
20. [238C] Joao Rodrigues, Wenya Nan, Agostinho C. Rosa. EEG Biofeedback and Brain Computer Interface in Games. Proc VJ 2013. (http://vj2013.dei.uc.pt/wp-content/uploads/2013/09/vj2013_submission_25.pdf)
21. [] Rothlubbers S, Relvas V and Leal A, Figueiredo P (2013) Reduction of EEG artefacts induced by vibration in the MR-environment. Proc. 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2013); July 3-7, Osaka, Japan. [Poster presentation]
22. [] Relvas V and Sanches J, Figueiredo P (2013) Scalp EEG continuous spatial ERD/ERS quantification. Proc. 6th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA 2013), June 2013, Madeira, Portugal. [Poster presentation]
23. [] Rodrigues M, Figueiredo P, Sanches J (2013) A Bayesian approach to perfusion imaging using ASL MRI. Proc. 6th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA 2013), June 2013, Madeira, Portugal. [Poster presentation]
24. [] Rothlubbers S, Relvas V and Leal A, Figueiredo P (2013) Characterization and Reduction of MR-Environment-Related EEG artefacts. Proc. 6th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA 2013), June 2013, Madeira, Portugal. [Poster presentation]
25. [] Leite M, Friston K, Figueiredo P, Lemieux L (2013) Fast oscillatory activity: sparse spike synchronization in mean field neural models. Proc. 43rd Annual Meeting of the Society for Neuroscience, Nov 9-13, San Diego, USA. [Poster presentation]
26. [] Jorge J, Figueiredo P, Gruetter R, van der Zwaag W (2013) Intra and cross-modal negative BOLD responses in grey matter regions and large draining veins under contrast-varying visual stimulation. Proc. 43rd Annual Meeting of the Society for Neuroscience, Nov 9-13, San Diego, USA. [Poster presentation]
27. [] Murta T, Figueiredo P, Chaudhary UJ, Carmichael DW, Lemieux L (2013) * Beta phase influences the coupling between the simultaneously recorded intracranial EEG (icEEG) and Blood Oxygen Level Dependent (BOLD) signals in the motor cortex of humans performing finger tapping*. Proc. 43rd Annual Meeting of the Society for Neuroscience, Nov 9-13, San Diego, USA. [Poster presentation]
28. [] Sousa I, Vilela J, Figueiredo P (2013) Characterization of the ASL kinetic response to hypocapnia. Proc. 30th Annual Scientific Meeting of the ESMRMB, October 3-5, Toulouse, France. [Oral presentation]
29. [] Pinto J, Sousa I, Vilela J, Figueiredo P (2013) Reproducibility of cerebrovascular reactivity dynamics using breath-hold BOLD fMRI. Proc. 30th Annual Scientific Meeting of the ESMRMB, October 3-5, Toulouse, France. [Oral presentation]
30. [] Abreu R, Nunes RG, Leal A, Figueiredo P (2013) A multimodal approach combining EEG, fMRI and DTI for mapping epileptic networks. Proc. 30th Annual Scientific Meeting of the ESMRMB, October 3-5, Toulouse, France. [E-poster presentation]
31. [237C] R. Nogueras, C. Cotta, C.M. Fernandes, J.L.J. Laredo, J.J. Merelo and A.C. Rosa, An Analysis of a Selecto-Lamarckian Model of Multimemetic Algorithms with Dynamic Self-Organized Topology, Proc. of the 2nd International Conference on the Theory and Practice of Natural Computing, LNCS 8273, Springer, December 2013, pp. 205-216, (http://link.springer.com/chapter/10.1007%2F978-3-642-45008-2_17).
32. [236C] Carlos Fernandes, Juan Laredo, Juan Merelo, Calos Costa, Agostinho C. Rosa. Dynamic and Partially Connected ring topologies for Evolutionary Algorithms with Structured Populations. Proc. EvoApps 2014.

PhD Thesis

1. [] Inês Nunes de Sousa, Quantitative methods for functional magnetic resonance imaging, Instituto Superior Técnico, Setembro 2013.

MSc Thesis

1. [] Juliana Rodrigues, Mapping brain functions using resting-state fMRI: application in the presurgical assessment of epilepsy patients, Mestrado em Engenharia Biológica, Instituto Superior Técnico, Universidade de Lisboa, Dezembro 2013.
2. [] Márcia Santos, Identification of Arterial Spin Labelling Perfusion Imaging Biomarkers in Dementia, Mestrado em Engenharia Biomédica, Instituto Superior Técnico, Universidade de Lisboa, Dezembro 2013.

2012 ( 40 = 3+3R - 1B - 6L - 13+13C + 1PhD) - Published¶

Journal Paper¶

1. [308R] Wenya Nan, Joao Pedro Rodrigues, Jiali Ma, Xiaoting Qu, Feng Wan, Mang I Vai, Agostinho C. Rosa. Individual alpha neurofeedback training effect on short term memory. International Journal of Psychophysiology. http://dx.doi.org/10.1016/j.ijpsycho.2012.07.182
2. [307R] Vasco Rui Carvalho Pereira Fernandes Fachada, Nuno Fachada, Tuomas Turpeinen, Paavo Rahkila, Agostinho C. Rosa and Heikki Kainulainen. TopoCell – An image analysis tool to study intracellular topography. The Federation of American Society of Experimental Biology (FASEB) Journal. 2012;26:578.2
3. [] Jorge JP, Figueiredo P, van der Zwaag W, Marques JP (2012) Signal fluctuations in fMRI data acquired with 2D-EPI and 3D-EPI at 7 Tesla. Magn. Reson. Imag. [Epub ahead of print]
4. [] Murta T, Leal A, Garrido M, Figueiredo P (2012) Dynamic Causal Modelling of epileptic seizure propagation pathways: a combined EEG-fMRI study. NeuroImage 62(3): 1634-1642.
5. [] Lemos R, Figueiredo P, Santana I, Simões MR, Castelo-Branco M (2012) Temporal integration of 3D coherent motion cues defining simple objects of unknown orientation is impaired in amnestic Mild Cognitive Impairment and Alzheimer’s Disease. Journal of Alzheimer’s Disease 28(4):885-96.
6. [235R] Christian Guilleminault, Agostinho da Rosa, Chad C. Hagen, Olga Prilipko. Cyclic Alternating Pattern (CAP) and Sleep-Disordered Breathing in Young Women : History of the Validation of CAP Scoring and a Translational Study. Sleep Medicine Clinics 09/2012; 7(3):563–569.

Book Edition¶

1. [234E] Kurosh Madani, António Dourado Correia, Agostinho C. Rosa And Joaquim Filipe. Computational Intelligence, Revised And Selected Papers Of The International Joint Conference, IJCCI 2010, Valencia, Spain, October 2010, Studies In Computational Intelligence, Volume 399, 2012. DOI: 10.1007/978-3-642-27534-0.

Book Chapter¶

1. [233B] CM Fernandes, AM Mora, JJ Merelo, P Castilho, LJ Herrera, AC Rosa. Towards an Automatic Sleep Classification Procedure with Wavelet Based Feature Extraction.
2. [232B] C.M. Fernandes, J.J. Merelo, A.C. Rosa. Replacement Strategies for ADMGA. Studies in Computational Intelligence, Lecture Notes in Computer Science (LNCS).
3. [231B] C.M. Fernandes, J.L.J. Laredo, Antonio Mora, A.C. Rosa, J.J. Merelo. A Study on the Mutation Rates of a Genetic Algorithm Interacting with a Sandpile. Lecture Notes in Computer Science (LCNS).
4. [230B] C.M. Fernandes, XXXX...XXX, A.C. Rosa. Pherogenic Sleep-Paintings with KANTS: From Figurative to Abstract Swarm Art. Alife XIII.
5. [229B] C.M. Fernandes, J.J. Merelo, A.C. Rosa. Controlling the Parameters of the Particle Swarm Optimization with a Self-Organized Criticality Model. PPSN 2012.
6. [228B] Chin Ian Low, Daria Migotina, Joao P Rodrigues, Joao Semedo, Feng Wan, Peng Un Mak, Mang I Vai, Fernando Melicio, J Gomes Pereira and Agostinho C. Rosa. Object Recognition Test in Peripheral Vision: A Study on the Influence of Object Color, Pattern and Shape. Springer series of Lecture Notes in Artificial Intelligence (LNAI).

Conference Proceedings¶

1. [227C] DG Migotina, AC Rosa. Segmentation of Sleep EEG Signal by Optimal Threshold. Proceedings of IASTED Biomed 2012, pp 114-121. DOI: 10.2316/P.2012.764-063.
2. [226C] JP Rodrigues, JD Semedo, FM Melicio, JG Pereira, AC Rosa. JP Rodrigues, JD Semedo, FM Melicio, JG Pereira, AC Rosa. Peripheral Vision Dynamic test for Athletes. Proceedings of IASTED Biomed 2012, pp 933-938. DOI: 10.2316/P.2012.764-063.
3. [225C] DG Migotina, A Calapez, A Rosa. Automatic Artifacts Detection and Classification in Sleep EEG Signals Using Descriptive Statistics and Histogram Analysis: Comparison of Two Detectors. Proc of 2012 Spring World Congress on Engineering and Technlogy (SCET2012) pp 26-31, 2012.
4. [224C] Wenya Nan, Joao Pedro Rodrigues, Feng Wan, Peng Un Mak, Pui In Mak, Mang I Vai, Agostinho C. Rosa. A Further Study on Short Term Memory Improvement by Neurofeedback. Proc IEEE ICBEB 2012. DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/iCBEB.2012.25.
5. [223C] Fernandes CM, Rosa AC. Particle Swarm with Self-Organized Criticality. Gecco 2012.
6. [222C] Chin Ian Low, Daria Migotina, Joao P Rodrigues, Joao Semedo, Feng Wan, Peng Un Mak, Mang I Vai, Fernando Melicio, J Gomes Pereira and Agostinho C. Rosa. Object Recognition Test in Peripheral Vision: A Study on the Influence of Object Color, Pattern and Shape. 2012 International Conference on Brain Informatics (BI 2012).
7. [221C] Wenya Nan, Lanshin Chang, Joao Pedro Rodrigues, Feng Wan, Mang I Vai, Agostinho C. Rosa. Neurofeedback for the Treatment of Schizophrenia: Case Study. Proc of IEEE VECIMS 2012, TienJin, pp 78-81, 2012.
8. [220C] Nuno Leite, Rui Neves, Nuno Horta, Fernando Melıcio and Agostinho C. Rosa. Solving an Uncapacitated Exam Timetabling Problem Instance using a Hybrid NSGA-II. Proc of IJCCI-ECTA 2012(nominated Best Paper Award)
9. [219C] Carlos Fernandes, Antonio Mora, Juan Merelo, Agostinho C. Rosa Pherogenic Drawings: Generating Colored 2-Dimensional Abstract Representations of Sleep EEG with the KANTS Clustering Algorithm. Proc of IJCCI-ECTA 2012 (nominated Best Paper Award)
10. [218C] Carlos Fernandes, Juan Merelo, Agostinho C. Rosa. Using Self-Organized Criticality for Adjusting the Parameters of a Particle Swarm Optimization Algorithm. Proc of IJCCI-ECTA 2012 (nominated Best Paper Award)
11. [217C] C.M. Fernandes, J.J. Merelo, A.C. Rosa. Towards a 2-dimensional Self-organized Framework for Structured Population-based Metaheuristics. Proc International Conference on Complex Systems (ICCS’12).
12. [216C] C.M. Fernandes, J.J. Merelo, A.C. Rosa. Swarm Art with KANTS: Using an Ant Clustering Algorithm for Generating Sleep Data Drawings. Proc International Conference on Complex Systems (ICCS’12).
13. [] Leite M, Murta T, Vulliemoz S, Carmichael D, Figueiredo P, Lemieux L (2012) Narrow-band artefact correction in multiple-channel acquisitions: application to EEG recorded during fMRI. Proc. 29th Annual Scientific Meeting of the ESMRMB, October 2012, Lisbon, Portugal.
14. [] Jorge J, Figueiredo P, Gruetter R, va der Zwaag W (2012) Intra and cross-modal negative BOLD response to contrast-varying visual stimuli. Proc. 29th Annual Scientific Meeting of the ESMRMB, October 2012, Lisbon, Portugal.
15. [] Sousa I, Vilela P, Figueiredo P (2012) Regional variations of vascular delays during cued deep breathing. Proc. 29th Annual Scientific Meeting of the ESMRMB, October 2012, Lisbon, Portugal.
16. [] Sousa I, Vilela P, Figueiredo P (2012) Comparing CBF and BOLD dynamics in response to cued deep breathing. Proc. 29th Annual Scientific Meeting of the ESMRMB, October 2012, Lisbon, Portugal.
17. [] Pinto J, Jorge J, Vilela P, Figueiredo P (2012) Spatiotemporal dynamics of the ASL CBF and BOLD responses to breath-holding. Proc. 29th Annual Scientific Meeting of the ESMRMB, October 2012, Lisbon, Portugal.
18. [] Sousa M, Silveira M, Vilela P, Nunes de Oliveira S, Figueiredo P (2012) ASL perfusion and structural MRI for computer aided diagnosis in dementia. Proc. 29th Annual Scientific Meeting of the ESMRMB, October 2012, Lisbon, Portugal.
19. [] Osório P, Rosa P, Silvestre C, Figueiredo P (2012) Stochastic Dynamic Causal Modelling with Multiple-Model Kalman Filters. Proc. 7th International Workshop on Biosignal Interpretation (BSI2012) July 2-4, Como, Italy.
20. [] Osório P, Rosa P, Figueiredo P, Silvestre C (2012) DCM Model Selection with Multiple Model Kalman Filters. Proc. 18th Annual Meeting of the Organization for Human Brain Mapping (HBM 2012), June 2012, Beijing, China.
21. [] Leite M, Chaudhary U, Rodionov R, Carmichael D, Lemieux L, Figueiredo P (2012) EEG spectrum - BOLD correlations in epilepsy. Proc. 18th Annual Meeting of the Organization for Human Brain Mapping (HBM 2012), June 2012, Beijing, China.
22. [] Murta T, Leite M, Figueiredo P (2012) A study on the sensitivity of DCM inferences to haemodynamic variability. Proc. 18th Annual Meeting of the Organization for Human Brain Mapping (HBM 2012), June 2012, Beijing, China.
23. [] Jorge J, Vilela P, van der Zwaag, Figueiredo P (2012) Improving the characterization of the BOLD response to breath-hold challenges. Proc. 18th Annual Meeting of the Organization for Human Brain Mapping (HBM 2012), June 2012, Beijing, China.
24. [] Portelo A, Sousa I, Vilela P, Figueiredo P (2012) Non-invasive CVR assessment using ASL and BOLD. European Congress of Radiology (ECR 2012), March 2012, Vienna, Austria.
25. [] Rosa P, Silvestre C, Figueiredo P (2012) HRF Model Selection in Fmri Using Kalman Filtering. American Control Conference, June 2012, Montreal, Canada.

Thesis¶

1. [09D] Daria Migotina, “Symbolic Representation of the Sleep Electroencephalogram. Application in the Analysis of Sleep”. July 2012. PhD Thesis

2011 (40 = 9R – 1B - 10L – 20C) - Published¶

Journal Paper¶

1. [*R] A.M. Mora, C.M. Fernandes, J.J. Merelo, KANTS: A Self-Organized Ant System for Pattern Clustering and Classification, in Ant Colonies: Behavior in Insects and Computer Applications, Nova Publishers, in press, 2011.
2. [215R] C.M. Fernandes, J. J. Merelo A.C. Rosa. A comparative study on the performance of dissortative mating and immigrants’ strategies for evolutionary dynamic optimization", Special Issue on Interpretable Fuzzy Systems, Information Sciences, Vol 181, issue 20, pp 4428-4459, 2011 doi:10.1016/j.ins.2011.05.022.
3. [] Vilela P, Pimentel M, Sousa I, Figueiredo P (2011) Quantification of Perfusion Changes during a Motor Task Using Arterial Spin Labeling. The Neuroradiology Journal 1: 51-57.
4. [] Sousa I, Santos N, Sanches J, Vilela P, Figueiredo P (2011) Challenges for Non-Invasive Brain Perfusion Quantification Using Arterial Spin Labeling. The Neuroradiology Journal 1: 44-50.
5. [] Cabral C, Silveira M, Figueiredo P (2011) Decoding visual brain states from fMRI using an ensemble of classifiers. Pattern Recognition 44: 2983–2993.
6. [] Santos N, Sanches J, Sousa I, Figueiredo P (2011) Bayesian Optimization of Sampling and Estimation in PASL-MRI Perfusion Imaging. IEEE Transactions on Biomedical Engineering. 58(11): 3165-3174.
7. [] Pimentel M, Vilela P, Sousa I, Figueiredo P (2011) Localization of the hand motor area by ASL and BOLD fMRI. Human Brain Mapping [Epub ahead of print].
8. [] Pereira C, Teixeira J, Figueiredo P, Xavier J, Luís Castro S, Brattico E (2011) Music and Emotions in the Brain: Familiarity Matters. PLoS One. 6(11):e27241. Epub 2011 Nov 16.
9. [] Lemos R, Figueiredo P, Santana I, Simões MR, Castelo-Branco M (2011) Temporal integration of 3D coherent motion cues defining simple objects of unknown orientation is impaired in amnestic Mild Cognitive Impairment and Alzheimer’s Disease. Journal of Alzheimer’s Disease [Epub ahead of print].

Book Edition¶

1. [214E] Madani K, Correia A.D., Rosa A, Filipe J. (eds): Computational Intelligence, Springer, Series: Studies in Computational Intelligence, Vol. 343, 1st Edition, 2011, 299p, Hardcover
   ISBN: 978-3-642-20205-6. 2011.

Book Chapter¶

1. [213B] C Isidoro, N Fachada, F Barata, AC Rosa. An Agent Based Model of Dengue Disease Transmission by Aedes aegypti Populations. ECAL, 2009 LNCS, Artificial Life, Part II, pp 339-346 Springer 2011.
2. [212B] CM Fernandes, CF Lima, JLJ Gimenez, AC Rosa, JJ Merelo. An Ant-based Rule for UMDA’s update Strategy. ECAL 2009. LNCS, Artificial Life, Part I, pp 339-346 Springer, 2011.
3. [211B] AC Rosa and JP Rodrigues. Dream therapy: correlation of dream contents with encephalographic and cardiovascular activations. In "States of Consciousness: Experimental Insights into Meditation, Waking, Sleep and Dreams”, Dean Cvetkovic and Irena Cosic (eds), Springer, The Frontiers Collection, ISBN 9-78-3-642-18046-0, pp 109-132, 2011
4. [210B] C.M. Fernandes, J.J. Merelo, A.C. Rosa, Enhancing the Adaptive Dissortative Mating Genetic Algorithm in Fast Non Stationary Fitness Functions, to appear in selected papers from IJJCI 2010, Studies in Computational Intelligence, LNCS, 2011
5. [*B] J.L.J. Laredo, J.J. Merelo, C.M. Fernandes, A. Mora, M.G. Arenas, P. Castillo and P. G. Sánchez Analyzing the Performance of Different Population Structures for an Agent-based Evolutionary Algorithm, to appear in the Proceedings of the Learning and Intelligent Optimization LION 5, Lecture Notes in Computer Science, 2011
6. [2009B] C.M. Fernandes, J.L.J. Laredo, Antonio Mora, A.C. Rosa, J.J. Merelo, A Study on the Mutation Rates of a Genetic Algorithm Interacting with a Sandpile, Proceedings of the EvoStar 2011, Lecture Notes in Computer Science, pp. 32-42, 2011.
7. [206B] C.M. Fernandes, J.L.J. Laredo, Antonio Mora, A.C. Rosa, J.J. Merelo, The Sandpile Mutation Operator for Genetic Algorithms, to appear in the Proceedings of the Learning and Intelligent Optimization LION 5, Lecture Notes in Computer Science 6683, pp 552-566, 2011.
8. [205B] C.M. Fernandes, J.L.J. Laredo, Antonio Mora, A.C. Rosa, J.J. Merelo, A Study on the Mutation Rates of a Genetic Algorithm Interacting with a Sandpile, to appear in Lecture Notes in Computer Science, 2011.
9. [204B] Rodrigues JP, Rosa AC. EEG Biofeedback: Viability and Future Directions. In Human Computer System Interaction: Background and Application 2, Hippe, Zdzislaw S; Kullowski, Julusz L; Mroczak, Theresa (Eds.), Computational Intelligence and Complexity series, Springer ISBN 978-3-642-23171-1, 2011.
10. [203B] CM Fernandes, AM Mora, JJ Merelo, P Castilho, LJ Herrera, AC Rosa. Towards an Automatic Sleep Classification Procedure with Wavelet Based Feature Extraction.

Conference Proceedings¶

1. [*C] A.F. Ares, A. Mora, P.A. Castillo, J.J. Merelo, P. García Sanchéz, C.M. Fernandes, Optimizing strategy parameters in a game bot, to appear in the proceedings of IWANN 2011.
2. [202C] C.M. Fernandes, C. Isidoro, F. Barata, J.J. Merelo, A.C.Rosa, From Pherographia to Color Pherographia — Color Sketching with Artificial Ants, Proceedings of IEEE Congress on Evolutionary Computation, , pp. 1124 – 1131, 2011.
3. [201C] Ieong Tom, Don Zhang, Wenya Nan, Mak Pui Yen, Vai Mang I, Rosa AC. Cardiovascular characterization of Snorers. CinC 2011, to appear.
4. [200C] L.J. Herrera, A.M. Mora, D. Migotina, A.C.Rosa, C.M. Fernandes, Symbolic Representation of EEG for Sleep Stage Classification, IEEE ISDA2011 pp 253-258, 2011.
5. [199C] DG Migotina, Carlos Isidoro, AC Rosa. Brain Art: Abstract Visualization of Sleeping Brain. Proc 14th Generative Art Conference GA2011, pp 141-153, 2011.
6. [*C] A.F. Ares, A. Mora, P.A. Castillo, J.J. Merelo, P. García Sanchéz, C.M. Fernandes, Evolving Galactic Conquerors, submitted to the IEEE Congress on Evolutionary Computation, 2011.
7. [*C] A.F. Ares, A. Mora, P.A. Castillo, J.J. Merelo, P. García Sanchéz, C.M. Fernandes, Optimizing the Parameters of a Real-time Strategy Bot using Real-valued Evolutionary Algorithms, submitted to the 2011 Genetic and Evolutionary Computation Conference, 2011.
8. [] Rosa P, Silvestre C, Figueiredo P (2011) HRF Model Selection in fMRI using Multiple-Model Kalman Filters. Proc. 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), June 2011, Québec City, Canada.
9. [] Rodrigues J, Andrade A, Fernandes H, Figueiredo P (2011) Effect of TR on a spectral effective connectivity fMRI study. 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), June 2011, Québec City, Canada.
10. [] Jorge JP, Figueiredo P, van der Zwaag W, Narsude M, Marques JP (2011) Correlated noise correction in 2D and 3D fMRI at 7 Tesla. Proc. 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), June 2011, Québec City, Canada.
11. [] Murta T, Leal A, Figueiredo P (2011) Dynamic Causal Modelling of EEG-fMRI data of epileptic seizures. Proc. 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), June 2011, Québec City, Canada.
12. [] Leite M, Leal A, Figueiredo P (2011) Using EEG metrics to predict BOLD fMRI data in epilepsy. Proc. 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), June 2011, Québec City, Canada.
13. [] Leite M, Leal A, Figueiredo P (2011) A voxelwise study of the HRF during epileptic seizures. Proc. 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), June 2011, Québec City, Canada.
14. [] Jorge JP, Figueiredo P, van der Zwaag W, Narsude M, Marques JP (2011) Sources of signal fluctuations in single-shot 2D EPI and segmented 3D EVI acquisitions for fMRI at 7T. Proc. 19th Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2011), May 2011, Montreal, Canada.
15. [] Santos N, Sanches JM, Sousa I, Figueiredo P (2011) A Total Variation spatial prior for the estimation of perfusion and transit time maps in PASL-MRI. Proc. 19th Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2011), May 2011, Montreal, Canada.and BOLD responses to a Cued Deep Breathing paradigm. Proc. 19th Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2011), May 2011, Montreal, Canada.
16. [] Afonso D, Figueiredo P, Sanches J (2011) Automatic Hyper-Parameter estimation in fMRI. Proceedings of the 5th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA 2011), June 8-10, Las Palmas de Gran Canaria, Spain.
17. [] Santos N, Sanches JM, Figueiredo P (2011) Spatial priors for perfusion and transit time estimation in PASL-MRI. Proc. 10th IEEE International Symposium on Biomedical Imaging (ISBI 2011), March 30 – April 2, Chicago, USA.
18. [] Cabral C, Silveira M, Figueiredo P (2011) Decoding visual stimuli using classifier ensembles with optimized feature selection. Proc. 10th IEEE International Symposium on Biomedical Imaging (ISBI 2011), March 30 – April 2, Chicago, USA.
19. [] Portelo A, Sousa I, Vilela P, Figueiredo P (2011) Avaliação não-invasiva da vaso-reactividade cerebral por BOLD fMRI. VII Congresso da Sociedade Portuguesa de Neurorradiologia, 20-22 Maio2011, Amadora, Portugal.
20. [] Sousa I, Portelo A, Vilela P, Figueiredo P (2011) Avaliação não-invasiva por ressonância magnética das variações do metabolismo cerebral de O2. VII Congresso da Sociedade Portuguesa de Neurorradiologia, 20-22 Maio2011, Amadora, Portugal.

2010 (16 = 3R – 4L – 9C) - Published¶

Journal Paper¶

1. [*R] Carlos M. Fernandes. Pherographia: Drawing by Ants, Leonardo J Vol 4, Issue 2, the Journal of the International Society for the Arts, Sciences and Technology, pp 107-112, MIT Press, April 2010.
2. [198R] Calapez A, Rosa A. A Statistical Pixel Intensity Model for Segmentation of Confocal Laser Scanning Microscopy Images. IEEE Trans Imaging Processing, Vol 19, NO. 9, pp 2408-2418, 2010.
3. [197R] Alves GR, Rosa AC, Brito M, Pradella-Hallinam M, Tufik S. Cyclic Alternating Pattern (CAP) in normal children from 12 to 24 months. Arq NeuroPsiquiatr 2010,68(5),689-693,.
4. [196R] C Fernandes, JJ Merelo, A Rosa. A Self-Organized Criticality Mutation operator for Genetic Algorithm based on sandpile model. Submitted to IJON.

Book Chapter¶

1. [195B] C Isidoro, N Fachada, F Barata, AC Rosa. An Agent Based Model of Dengue Disease Transmission by Aedes aegypti Populations. ECAL, 2009 LNCS, Artificial Life, Part II, pp 339-346 Springer.
2. [194B] CM Fernandes, CF Lima, JLJ Gimenez, AC Rosa, JJ Merelo. An Ant-based Rule for UMDA’s update Strategy. ECAL 2009. LNCS, Artificial Life, Part I, pp 386-393 Springer.
3. [193B] AC Rosa and JP Rodrigues. Dream therapy: correlation of dream contents with encephalographic and cardiovascular activations. In "States of Consciousness: Experimental Insights into Meditation, Waking, Sleep and Dreams”, Dean Cvetkovic and Irene Cosic (eds), Springer, The Frontiers Collection, ISBN 9-78-3-642-18046-0.
4. [192B] CM Fernandes, AM Mora, JJ Merelo, P Castilho, LJ Herrera, AC Rosa. Towards an Automatic Sleep Classification Procedure with Wavelet Based Feature Extraction.

Conference Proceedings¶

1. [191C] Daria G Migotina, Agostinho C Rosa, Ana LN Fred. Automatic K-complex detection using Hjorth parameters and fuzzy decision. ACM SAC 2010, pp 979 – 980, 2010.
2. [190C] Joao PM Rodrigues, Daria G Migotina, Agostinho C da Rosa. EEG Training Platform; improving brain-computer Interface and cognitive skills. IEEE HSI 2010, pp 425-429 , 2010. Doi: 10.1109/HSI.2010.5514535.
3. [189C] Dulce Calçada, Agostinho C. Rosa, Luis C Duarte, Vitor V Lopes. Comparison of GA and PSO Performance in Parameter Estimation of Microbial Growth Models: A Case-Study Using Experimental Data. IEEE WCCI 2010, pp1-8. http://dx.doi.org/10.1109/CEC.2010.5586489
4. [188C] Joao PM Rodrigues, Joao Semedo, Fernando M Melicio, Agostinho C da Rosa. Peripheral Vision Pattern Detection Dynamic Test. ICEIS pp 242 – 247, 2010.
5. [187C] Carlos M Fernandes, Agostinho C Rosa, Juan Julian Merelo. Investigation Replacement Strategies for the Adaptive Dissortative Mating Genetic Algorithm. IJCCI-ICEC 2010, pp 104 – 113, 2010.
6. [186C] A.M. Mora, C.M. Fernandes, L.J. Herrera, P.A. Castillo, J.J. Merelo, A.C. Rosa, Sleeping with Ants, SVMs, Multilayer Perceptrons and SOMs, ISDA’10, 2010, pp 126-131.
7. [185C] Carlos M. Fernandes, J.L.J. Laredo, J.J. Merelo and A.C. Rosa, A Self-Organized Criticality Online Adjustment of Genetic Algorithms’ Mutation Rate, Workshop on Self-Tuning, Self-Configuring and Self-Generating Search Heuristics (Self* 2010), 2010.
8. [184C] A.M. Mora, Carlos M. Fernandes, L.J. Herrera, P.A. Castillo, A.C. Rosa, JJ Merelo, Towards an Automatic Sleep Classification Procedure Using Wavelet Based Feature Extraction, in Proceedings of the 2010 International Conference on Metaheuristics and Nature Inspired Computing, 2010.
9. [*C] J.J. Merelo, A.M. Mora, J.L.J. Laredo, P.A. Castillo, C.M. Fernandes, Optimizing Evolutionary Algorithms at Program Level, in Proceedings of the 2010 International Conference on Metaheuristics and Nature Inspired Computing, 2010.
10. [] Silveira M, Figueiredo P. (2010) Joint fMRI brain activation detection and segmentation using level sets. Proc. 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010); 1:5708-11, August 31 - September 4, Buenos Aires, Argentina.
11. [] Silvestre C, Figueiredo P, Rosa P. (2010) Multiple-Model Set-Valued Observers: A new tool for HRF model selection in fMRI. Proc. 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010); 1:5704-7, August 31 - September 4, Buenos Aires, Argentina.
12. [] Silvestre C, Figueiredo P, Rosa P. (2010) On the distinguishability of HRF models in fMRI. Proc. 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010); 1:5677-80, August 31 - September 4, Buenos Aires, Argentina.
13. [] Santos N, Sanches JM, Figueiredo P (2010) Bayesian optimization of perfusion and transit time estimation in PASL-MRI. Proc. 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010); 1:4284-7, August 31 - September 4, Buenos Aires, Argentina.
14. [] Figueiredo P, Silvestre C, Rosa P (2010) Nonlinear HRF model identification using multiple model set valued observers. Proc. 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), June 2010, Barcelona, Spain.
15. [] Saiote C, Silva J, Gomes C, Lauterbach M, Reimão S, Figueiredo P (2010) Parametric fMRI correlates of multiple face orientations. Proc. 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), June 2010, Barcelona, Spain.
16. [] Afonso D, Figueiredo P, Sanches J (2010) Parameter free Bayesian activity detection in fMRI. Proc. 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), June 2010, Barcelona, Spain.
17. [] Fernandes H, Andrade A, Santos G, Figueiredo P (2010) Temporal Representation of fMRI Time Series in Rest Connectivity Studies. Proc. 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), June 2010, Barcelona, Spain.
18. [] Figueiredo P, Leal A (2010) Investigation of seizure propagation using EEG-fMRI and dynamic causal modelling. Proc. 18th Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), May 2010, Stockholm, Sweden.
19. [] Pimentel M, Sousa I, Vilela P, Figueiredo P (2010) Localization of the hand motor area using BOLD and ASL fMRI. Proc. 18th Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), May 2010, Stockholm, Sweden.
20. [] Pimentel M, Sousa I, Vilela P, Figueiredo P (2010) Correction of partial volume effects in PASL perfusion measurements. Proc. 18th Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), May 2010, Stockholm, Sweden.
21. [] Sanches J, Sousa I, Figueiredo P (2010) Bayesian Fisher Information Criterion for Sampling Optimization in ASL-MRI, Proc. 10th IEEE International Symposium on Biomedical Imaging (ISBI 2010), 14-17 April, Rotterdam, The Netherlands.

2009 (10 = 0R - 6L – 4C - 1TD - 3TM) - Published¶

Journal Paper¶

Book Edition¶

1. [180E] António Dourado, Agostinho C. Rosa, Kurosh Madani (eds)
   IJCCI 2009 - Proceedings of the International Joint Conference on Computational Intelligence
   INSTICC Press Oct 2009.

Book Chapter Paper¶

1. [183B] C Isidoro, N Fachada, F Barata, AC Rosa. Agent Based Model of Aedes aegypti Population Dynamics. EPIA-ALEA, LNAI 5816, pp 53-64, 2009.
2. [*B] Juan L.J. Laredo, Carlos M. Fernandes, Antonio M. Mora, Pedro A. Castillo, Pablo García-Sanchez, J.J. Merelo. Studying the Cache Size in a Gossip-Based Evolutionary Algorithm, in G.A. Papadopoulos and C. Badica (Eds.), Proceedings of the 3rd International Symposium on Intelligent Distributed Computing, Studies in Computational Intelligence, vol. 237, pp. 131-140, 2009.
3. [182B] C Isidoro, N Fachada, F Barata, AC Rosa. An Agent Based Model of Dengue Disease Transmission by Aedes aegypti Populations. ECAL, 2009, LNAI 5777, pp 345-352.
4. [181B] CM Fernandes, CF Lima, JLJ Gimenez, AC Rosa, JJ Merelo. An Ant-based Rule for UMDA’s update Strategy. ECAL 2009. LNAI 5777, pp 391-398.
5. [179B] AC Rosa and JP Rodrigues. "Dream therapy: correlation of dream contents with encephalographic and cardiovascular activations". In"States of Consciousness: Experimental Insights into Meditation, Waking, Sleep and Dreams”, Dean Cvetkovic (edt), Springer-Verlag Physics Edition of “The Frontiers Collection”

Conference Paper¶

1. [178C] Fachada N, Lopes V, Rosa AC.
   Influenza A modeling and simulation
   Proc ACM SAC – SIM Tracks, pp 2093-2100, 2009.
   • DOI:10.1145/1529282.1529744
   • http://dl.acm.org/citation.cfm?doid=1529282.1529744
2. [177C] C Isidoro, N Fachada, F Barata, AC Rosa. Artificial Life Model of Dengue Host-Vector Disease Propagation. Proc of IJCCI - ICEC, pp 243-247, 2009.
3. [*C] Juan L.J. Laredo, Pedro A. Castillo, Antonio M. Mora, Carlos M. Fernandes, J.J. Merelo.Improving Genetic Algorithms Performance via Deterministic Population Shrinkage, in Proceedings of the 11th Genetic and Evolutionary Computation Conference (GECCO 2009), ACM Press, pp.819-826, 2009.

Thesis¶

• [08D] Carlos M Fernandes, “Diversity-Enhanced Genetic Algorithms for Dynamic Optimization”. IST PhD Thesis, Dez 2009.
• [10M] João Pedro de Matos Rodrigues. Monitoring Electrocortical Activity During EEG Biofeedback. IST MSc Thesis, Nov 2009.
• [11M] Andre Ramalho Santos Rosado. Detecção Automática Detecção Automática de Actividade Epileptiforme Interictal no EEG. IST MSc Thesis, Set 2009.
• [12M] Dulce Isabel Viegas Calçada. “Modeling of the Physiology of D. hansenii Using Population-based Search Methods for Parameter Estimation”. IST MSc Thesis, Nov 2009.

2008 (21 = 6R – 5L – 9C - 1T)¶

Journal¶

1. [163R] C Fernandes, A Rosa. Self-Adjusting the Intensity of Assortative Mating in Genetic Algorithms. J of Soft Computing 12(10), pp. 955-979, 2008. (IF = 0.516 2006).

2. [*R] R. C. Martins, V. V. Lopes, A. A. Vicente, and J. A. Teixeira. Computational shelf-life dating: complex systems approaches to food quality and safety. Food and Bioprocess Technology, An International Journal, 1(3):207–222, 2008

3. [*R] R. C. Martins, V. V. Lopes, P. Valentão, B. M. Silva, J. C. M. F. Carvalho, P. Amaral, M. T. Batista, M. R. Seabra, and P. B. Andrade. Relevant principal component analysis applied to the characterization of Portuguese heather honey. Natural Product Research, In Press.

4. [*R] R. C. Martins, V. V. Lopes, and A. A. Vicente. Sistemas computacionais para a previsão da qualidade e seguranca alimentar: evolução e sistemas complexos. Ingenium,, 104:57-60, 2008.

5. [167R] Cristian Munteanu, Francisco Cabrera, and Agostinho C. Rosa. Enhancing Obstetric and Genecology Ultrasound Images by Adaptation of the Speckle Reducing Anisotropic Diffusion Filter. Artificial Intelligence in Medicine. 43, pp 223-242, 2008. (IF = 1.634 2006).

6. [*R] R. C. Martins, Raquel Oliveira, F. Bento, D. Geraldo, V. V. Lopes, P. Guedes de Pinho, C. M. Oliveira, and A. C. Silva Ferreira. Oxidation management of white wines using cyclic voltammetry and multivariate process monitoring. Journal of Agricultural and Food Chemistry, In Press.

7. [176R] MC Lopes, C Guilleminault, A Rosa, C Passarelli, S Roizenblat, S Tufik. “Delta Sleep Instability in children with chronic arthritis”. Brazilian Journal of Medical and Biological Research (2008) 41:938-943

8. [U] Walter Moraes, Dalva Poyares, Christian Guilleminault, Agostinho C Rosa, Marco Tulio de Mello, Adriana Dourado, Sergio Tufik
Overnight weight loss: relationship with sleep structure and heart rate variability
Nature Precedings <http://hdl.handle.net/10101/npre.2008.2342.1> (2008)

Book Chapters¶

7. [*L] R. C. Martins, V. V. Lopes, A. A. Vicente, and J. A. Teixeira. Chapter 1.4: Numerical solutions - finite element and finite volume methods. Optimization in Food Engineering, Ferruh Erdogdu (Ed.), pp 49-108, 2008.

8. [166L] Carlos Fernandes, Agostinho C. Rosa. Evolutionary Algorithms with Dissortative Marting in Static and Dynamic Environments. In “Advances in Evolutionary Algorithms”, ISBN 978-3-902613-32-5. ARS Press, Vienna, Austria. In Press.

9. [168L] AM Mora, CM Fernandes, JJ Merelo, V Ramos, JL Laredo, AC Rosa. KohonAnts: A Self-Organizing Ant Algorithm for Clustering and Pattern Classification. ALIFE XI, pp 428-435, 2008, MIT Press.

10. [169L] JL Laredo, PA Castillo, AM Mora, JJ Merelo, A Rosa, C Fernandes. Evolvable Agents in Static and Dynamic Optimization Problems. PPSN, Lectures Notes in Computer Sciences 5199, Springer-Verlag, ISBN 978-3-540-87699-1, pp. 488-497, 2008.

11. [170L] C Fernandes, AM Mora, JJ Merelo, V Ramos, JLJ Laredo, A Rosa. KANTS: Artificial Ant System for Classification. ANTSI08. Lectures Notes in Computer Science, Vol 5217, Springer-Verlag, ISBN 978-3-3540-87256-1 pp 339-346. http://dx.doi.org/10.1007/978-3-540-87527-735

Conference Proceedings¶

12. [164C] C Fernandes, C Lima, A Rosa. UMDA for Dynamic Optimization Problems. Proc of GECCO 2008, pp 399-406.

13. [165C] C Fernandes, J Merello, V Ramos, A Rosa. A Self-organized Criticality Mutation operator for Dynamic Optimization Problems. Proc of GECCO 2008, pp 937-944.

14. [*C] Claudio Lima, C Fernandes. Investigating Restricted Tournament Replacement in ECGA for Non-Stationary Environments. Proc. of GECCO 2008, pp 439-446.

15. [171C] C Fernandes. JJ Merelo, A Rosa. Tracking Extrema in Dynamic Fitness Landscapes with Dissortative Mating Genetic Algorithm. IEEE Proceedings of HIS 2008, pp 59-64.

16. [172C] Nuno Fachada, V. V. Lopes, and Agostinho C. Rosa. Simulation of immune system response to bacterial challenge. In ESM 2008 - European Simulation and Modeling, 2008, in press.

17. [*C] J.L.J. Laredo, P.A. Castillo, A.M. Mora, C. Fernandes, J.J. Merelo, Addressing Churn in a Peer-to-Peer Evolutionary Algorithm. PACT 2008. In Press.

18. [173C] Nuno Fachada, V. V. Lopes, and Agostinho C. Rosa. Simulating antigenic drift and shift in influenza A. ACM SAC 2009 – SIM Track - Advances in Computer Simulations, Accepted.

19. [174C] Nuno Fachada, V.itor V Lopes, and Agostinho C. Rosa. LAIS: Agent-based Simulator of immune system. ICAART 2008, accepted.

20. [175C] Agostinho C. Rosa, Nelson Perdigão. Java Hidden Markov Model applied to Multiple Sequence Alignment of Proteins.
Proc. of ISIB08 5th International Symposium on Integrative Bioinformatics, Leucorea, Lutherstadt Wittenberg, Germany, 2008

MSc Thesis¶

20. [9M] Agent-based Simulation of the Immune System. Nuno Fachada. MSc in EEC at MEEC-IST, 2008.

Technical Report¶

21. [*T] Claudio Lima, Carlos M. Fernandes, Fernando Lobo, Investigating Restricted Tournament Replacement in ECGA for Non-Stationary Environments (extended version), IlliGAL Technical Report No. 2008010, University of Illinois at Urbana-Champaign, 2008.

2007 (14 = 3R - 3L - 8C)¶

Journal Paper¶

1. [154R] Agostinho C. Rosa, Dalva Poyares, Walter Moraes, Fatima Cintra. Methodology in clinical sleep research. Cellular and Molecular Life Sciences 64 (2007) pp 1244-1253.

2. [155R] Christian Guilleminault , M.Cecilia Lopes, Chad C Hagen, Agostinho da Rosa. The Cyclic Alternating Pattern Demonstrates Increased Sleep Instability and Correlates With Fatigue and Sleepiness in Adults with Upper Airway Resistance Syndrome. Sleep 2007, 30(5), pp 641-647. (IF = 5.126 NC = 5)

3. [R] R. C. Martins and V. V. Lopes. Modelling supercooling in frozen strawberries: Experimental analysis, cellular automation and inverse problem methodology. Journal of Food Engineering, 80:126–141, 2007

Book Chapter¶

4. [156L] AC. Rosa, D. Poyares, C Guilleminault.. “Processamento de sinais eletrofisiológicos para análise e classificação automática do sono”. In “Biologia e Medicina do Sono”, S. Tufik (Edt), Manole Editors, SP, Brazil, Chap 40, pp 451-469, 2007.

5. [157L] AC. Rosa, GR Alves, MC Lopes, D Poyares, C Guilleminault. “Padrão Alternante Cíclico (CAP)”. In “Biologia e Medicina do Sono”, S. Tufik (Edt), Manole Editors, SP, Brazil, Chap 39, pp 440-450, 2007.

6. [162L] C Munteanu C, AC Rosa. Symmetry at the Genotypic Level and the Simple Inversion Operator. LNAI 4874, Progress in Artificial Intelligence, J Neves, M Santos, J Machado (edts), pp 209-222, Springer 2007.

Conference Proceedings¶

7. [153C] C Fernandes, V Ramos, A Rosa. Stigmergic Optimization in Dynamic Binary Landscape. 22nd AMC SAC 07, ACM/SIGAPP press, pp 747-748, 2007.

8. [158C] Fernandes C, Rosa A.C., Ramos V. Binary Ant Algorithm, GECCO’07 – Genetic and Evolutionary Computation Conference, ACM Press, London, UK, pp 41-48, 2007.

9. [159C] Nelson Perdigão, Daria Migotina, Agostinho C. Rosa. Evolutionary Algorithm for Phylogenetic Tree Construction, Proc. of MCCMB2007 - 3rd Moscow Conference on Computational Molecular Biology, pp. 248-249, Moscow State University, Russia, 2007

10. [160C] N Fachada, V Lopes, AC Rosa. Agent Based Modeling and Simulation of Immune System: a Review. New Trend in Artificial Intelligence. J Neves, M Santos, J Machado (edts), pp 300-315, EPPIA 2007

11. [161C] Vitorino Ramos, Carlos Fernandes, Agostinho C. Rosa, Abraham Ajith. Computational Chemotaxis in Ants and Bacteria over Dynamic Environments. IEEE CEC 2007, IEEE Press, USA, ISBN: 978-1-4244-1339-3, pp. 1109-1117, Sep. 2007.

12. [C] R. C. Martins, S. C. Borges, V. V. Lopes, R. N. Pereira, and A. A. Vicente. Monitoring goat milk quality during pasteurisation and ohmic treatment using uv-vis-swnir spectroscopy. In 2007 CIGR Section VI International Symposium on food and agricultural products: processing and innovations. 2007. (7 pages).

13. [C] R. C. Martins, V. V. Lopes, A. A. Vicente, and J. A. Teixeira. Computational shelf-life dating framework: A complex systems approach for scenario-driven simulations. In 1st Iberian Grid Infrastructure Conference Proceedings, Scientific Computing Series, pp 397–400, 2007.

14. [C] Martins, Rui C.; Coelho, A. M.; Lopes, Vítor V.; Pereira, Ricardo; Teixeira, J. A.; Vicente, A. A. Monitorização da qualidade do leite de cabra durante a pasteurização e processamento óhmico usando sensores de fibra óptica. Leite I+D+T, pp 4-5, 2007.

PhD Thesis¶

15. [6D] Physiologcal Modeling and characterization of olfactive discrimination in rats. Ernesto Saias Soares. Phd in Biomedical Engineering at IST, 2007.

2006 (10 = 5R – 3L - 2C)¶

Journal Paper¶

1. [143R] Christian Guilleminault, Ceyda Kirisoglu, AC da Rosa, Cecilia Lopes, Allison Chan. “Sleepwalking a disorder of NREM sleep instability”. Sleep Medicine, Vol 7, Issue:2, pp 163-170, 2006. C = 12

2. [147R] AC Rosa, GR Alves, M Brito, MC Lopes. Visual and Automatic CAP Scoring: inter-rater reliability study. Arquivos de Neuro-Psiquiatria, 64(3-A), 578-581, 2006. C = 1

3. [148R] Christian Guilleminault, Dalva Poyares, Agostinho C. Rosa, C Kirisoglu, T Almeida, MC Lopes. “Chronic Fatigue, unrefreshing sleep and nocturnal polysomnography”. Sleep Medicine, Vol 7, Issue 6, pp 513-520, 2006. C = 4

4. [151R] Christian Guilleminault , Agostinho da Rosa. Chad C Hagen, Olga Prilipko. Cyclic Alternating Pattern (CAP), Sleep Disordered Breathing, and Automatic Analysis. Sleep Medicine Clinic, 1, (2006) pp 483-489.

5. [152AR] Christian Guilleminault, Agostinho C. Rosa, Dalva Poyares, Yu-Shu Huang, Ceyda Kirisoglu. 159 SleepWalking: Sleep EEG and cyclic alternating pattern analyses. Sleep Medicine, Vol7, Supp2, pp 24-25, 2006.

Book Chapter¶

6. [146L] Vitorino Ramos, Carlos Fernandes, Agostinho C. Rosa, On Self-Regulated Swarms, Societal Memory, Speed and Dynamics. ALIFE X Proc. of the Tenth Int. Conf. on the Simulation and Synthesis of Living Systems, L.M. Rocha, L.S. Yaeger, M.A. Bedau, D. Floreano, R.L. Goldstone and A. Vespignani (Eds.), MIT Press, ISBN 0-262-68162-5, pp. 393-399, Bloomington, Indiana, USA, June 3-7, 2006.

7. [149L] C Fernandes, A Rosa. Self-Regulated Population Size in Evolutionary Algorithms. PPSN 06 – Parallel Problem solving in Nature, pp 921-929, 2006. C = 1

8. [150L] Fernando Melicio, Joao P Caldeira, Agostinho C. Rosa. THOR: A tool for school timetabling. PATAT 2006 EK Burke, R Rudova (Eds), pp 532-535. ISBN 80-210-3726-1.

Conference Proceeding¶

9. [144C] HongFei Gong, Rui Tavares, Agostinho C. Rosa, Jorge Silva, Vitor Dias. Optimization of Population Density Model of Olive fly (Bactrocera oleae) by Genetic Algorithms. Evolutionary Computation & Simulation Symposium, ECSS 2006, pp 181-188. ISBN 1-56555-303-9, 2006.

10. [145C] Jose Malaquias, Agostinho C. Rosa, Carlos Correia. A Small-Word Model of the Human Mind. ACM SAC Vol 1, pp15-22, 2006.

PhD Thesis¶

11. [D] Increasing Adaptability in Evolutionary Algorithms for Solving Complex Optimization Problems. Cristian Gabriel Munteanu. PhD at DEEC-IST, 2006.

2005 (21 = 8R – 4L - 9C)¶

Journal Paper¶

1. [124R] Maria Cecília Lopes, Agostinho C. Rosa, Dalva Poyares, Suely Roizenblatt, Cassia Passarelli, Sergio Tufik.. “Cyclic Alternating Pattern in peripubertal Children”. Journal Sleep Vol 28, Issue 2, pp 215-219, 2005. 2005;28(2);215-219. C = 14.

2. [125R] Christian Guilleminault, Ji-hyun Lee, Allison Chan, Maria-Cecilia Lopes, Yu-shu Huang, Agostinho da Rosa. Non-REM-sleep instability in recurrent sleepwalking in pre-pubertal children. Sleep Medicine, Vol.6, No.6 2005, pp 515-513. C = 15

3. [126R] Christian Guilleminault, Dalva Poyares, Agostinho C. Rosa, Yu-Shu Huang. Heart rate variability, sympathetic and vagal balance and EEG arousals in Upper Airway Resistance and mild Obstructive Sleep Apnea Syndromes. Sleep Medicine, Vol.6, No.5, 2005, pp 451-457. C = 4.

4. [136R] João Caldeira, Fernando Melício, Agostinho C. Rosa.“ Improving on Excellence. An Evolutionary Approach”, WSEAS Transaction on Information Science and Applications, Issue 5, Vol.2, pp 435-443, ISSN 1790-0832, 2005.

5. [137R] Rogério Largo, Agostinho C. Rosa.“ Wavelet Based CAP Detector with GA Tuning”, WSEAS Transaction on Information Science and Applications, Issue 5, Vol.2, pp 576-580, ISSN 1790-0832, 2005.

6. [138R] Raquel César, Agostinho C. Rosa. “3D Object Prototype-Based Recognition from 2D Images Using Features Net. WSEAS Transactions on Computers, Issue 11, Volume 4, pp. 1699-1706, November 2005. ISSN 1109-2750.

7. [140R] Poyares D, Almeida CM, Silva RS, Rosa A, Guilleminault C. Violent Behavior During Sleep. Rev, Bras, Psiquiatria, 2005 May, Suppl 1, pp 22-26.

8. [141R] Carlos Fernandes, Vitorino Ramos, Agostinho C. Rosa. Self-Regulated Artificial Ant Colonies on Digital Image Habitats. International Journal of Lateral Computing, Vol.2, No.1, December 2005. ISSN 0973-208X, pp 1-8.

Book Chapter¶

9. [128L] Carlos Fernandos, Vitorino Ramos, Agostinho C Rosa. “Varying the Population Size of Artificial Foraging Swarms on Time Varying Landscapes”, in W. Duch, J. Kacprzyk, E. Oja, S. Zadrozny (Eds.), Artificial Neural Networks: Biological Inspirations, Proc. ICANN´05: 15th Int. Conf., Warsaw, Poland, LNCS series, Vol. 3696, Part I, pp. 311-316, Springer-Verlag, Sept. 2005.

10. [139L] C Munteanu, A Rosa, M Galan, ER Royo. Evolutionary Color Constancy Algorithm based on the Gamut Mapping Paradigm. EUROCAST 2005, LNCS 3643, pp 404-409, 2005.

11. [132L] Nelson Perdigao, Agostinho C. Rosa.“ Multiple Sequence Alignment By Hybrid Evolutionary Algorithms Applied to Balibase”, Proc. II Int Conf Computacional Bioengineering 2005, Vol 2, pp 849-860, ISBN 972-8469-37-3, IST Press.

12. [129L] Rogerio Largo, Agostinho C. Rosa. “Wavelets based detection of a phases in sleep EEG”, Proc. II Int Conf Computacional Bioengineering 2005, Vol 2, pp 1105-1115. ISBN 972-8469-37-3, IST Press.

Conference Proceeding¶

13. [127C] FM Melicio, JP Caldeira, AC Rosa. “Solving real school timetabling problems with meta-heuristics” – Proceedings 4th WSEAS Int. Conf. Applied Mathematics and Computer Science, pp. 130-137, 2005.

14. [130C] Joao Caldeira, Fernando Melicio, Agostinho C. Rosa.“ Improving on Excellence. An Evolutionary Approach”, Proc. WSEAS EC 2005, pp 15-23.

15. [131C] Rogerio Largo, Agostinho C. Rosa.“ Wavelet Based CAP Detector with GA Tuning”, Proc. WSEAS EC 2005, pp 10-14.

16. [133C] N. Perdigão, A. Rosa, D. Migotina. “Hybrids Evolutive Algorithms for Multiple Sequence Alignment”. Proc of International MCCMB 2005 pp 291-293.

17. [134C] Rogerio Largo, Cristi Munteanu, Agostinho C. Rosa. “CAP Event Detection by Wavelet and GA Tuning”. Proc of IEEE - WISP EC 2005.

18. [135C] Raquel César, Agostinho C. Rosa. “3D Object Prototype-Based Recognition from 2D Images Using Features Net. 5th WSEAS Int. Conf. on Signal Processing, Computational Geometry & Artificial Vision (ICSPCGAV'05), pp 155-162.

19. [C?] Vitorino Ramos, Carlos Fernandes and Agostinho C. Rosa, On Ants, Bacteria and Dynamic Environments, in NCA-05, Natural Computing and Applications Workshop, Universitatea de Vest Din Timisoara brochure, pp. 74-81, Timisoara, Romania, Sep. 25-29, 2005.

20. [*C] Nelson Perdigao, J. Martins, E. Pires, R. Jorge, J. Tavares, Sobre a geração de malhar tridimensionais para fins computacionais a partir de imagens médicas. Proc. of Congress of Methods in Engineering, ISBN 84-95999-74-9, pp.217, SEMNI, Granada, Spain, 2005.

21. [*C] Nelson Perdigao, J. Martins, E. Pires, R. Jorge, J. Tavares, Geração de modelos de malhar de elementos finitos a partir de imagens médicas 20. Proc. of Congress of Methods in Engineering, ISBN 84-95999-74-9, pp.217, SEMNI, Granada, Spain, 2005.

PhD Thesis¶

22. [3D] Horários Escolares Semanais Simulated Annealing, Fernando Melício, Ph.D. Thesis, Instituto Superior Técnico, Lisbon, Portugal, 2005.

23. [4D] PadrãoAlternante Cíclico em Crianças e Adolescentes. Maria Cecilia Lopes da Conceição. Supervisor: Dalva Lucia Rollemberg Poyares. PhD in Sleep Medicine, Escola Paulista de Medicina, Universidade Federal de Sao Paulo, SP, Brazil, 2005.

MSc Thesis¶

24. [8M] Hybrid Evolutionary Algorithm for Multiple Sequence Alignment, Nelson Perdigão, Master Thesis, Instituto Superior Técnico, Lisbon, Portugal, 2005.

2004 (6 = 3R – 3C)¶

Journal Paper¶

1. [118R] C Munteanu, AC Rosa. “Gray-Scale Image Enhancement as an Automatic Process driven by Evolution”, IEEE – Transactions on Systems Man and Cybernetics – Part B, vol. 34 N=2, pp 1292-1298, April 2004 C = 4.

2. [119R] C Munteanu, AC Rosa. “Adaptive Reservoir Evolutionary Algorithm: An evolutionary on-line adaptation scheme for global function optimization”. Journal of Heuristics, 10, pp 555-586, 2004. C = 1.

3. [122R] Teresa Paiva, Thomas Penzel, Juergen Zulley, Colin Binnie, Michel Russel, Pierre Escourrou, Madalena Teles Araujo, Ana Fred, Alpo Varri, Mafred Spreng, Kim Nielsen, Carlos Belo, Agostinho C. Rosa and Christian Guilleminault. “The ENN Project – A Telematics Experience in Neurology”. Somnology 8:3-13, Feb 2004.

Conference Proceeding¶

4. [120C] JP Caldeira, F Melício, AC Rosa. Using a Hybrid Evolutionary-Taboo Algorithm to solve the JobShop Problem Problem” Proc ACM SAC 2004. pp 1446-1452. March, Nicosia, Cyprus.

5. [121C] Conceição C, Costa J, Rosa AC. Drowsiness Detection on Electroencephalogram Using Evolutionary Algorithms”. Proc of Biomedical Engineering BioMED 2004, B. Tilg (edt), Acta Press, 2004 pn 417-199. ISBN: 0-88986-408-X.

6. [123C] FM Melicio, JP Caldeira, AC Rosa. “Two neighbourhood approaches to the timetabling problem” – Proc. of PATAT 2004, Practice and Theory of Automated Timetabling, pp. 267-282, 2004.

Journal Abstract (5AR)¶

7. [AR] Sleep-related respiratory disorders in patients with Gastroesophageal Reflux symptoms, a clinical populational study, L. Mello-Fujita, S. Roizenblatt, D. L. Poyares, Agostinho C. Rosa, S. Conway, T. F. Almeida, S. Tufik, Sleep, Vol. 27, A212, AS, 2004.

8. [AR] Heart rate variability during REM and Non REM sleep in patients with euro cardiogenic syncope, D. Poyares, F. D. Cintra, C. Guilleminault, G. De Marchi, S. Barreto, S. Roizenblatt, Agostinho C. Rosa, S. Tufik, A. A. De Paola, Sleep, Vol. 27, A331-2, AS, 2004.

9. [AR] The impact of pain and dysfunction in sleep of children with polyarticular juvenile idiophatic arthritis, S. Roizenblatt, C. M. Passareli, C. A. Len, G. Moreira, M. T. Terreri, Agostinho C. Rosa, M. O. Hilario, S. Tufik, Journal of Sleep Research, Vol. 13, S1, 2004.

10. [AR] M. C. Lopes-Conceição, S. Roizenblatt, D. Poyares,Agostinho C. Rosa, C. M. Passareli, S. Tufik, Journal of Sleep Research, Vol. 13, S1, 2004.

11. [AR] Evolutionary tuning of Automatic Classification of CAP in Normal Children , Rogério Largo, M. Cecília Lopes, Agostinho C. Rosa, Journal of Sleep Research, Vol. 13, S1, 2004.

2003 (6 = 1L – 5C)¶

Book Chapter¶

1. [116L] HongFei Gong, Agostinho Cláudio da Rosa. Simulation Model for the Control of Olive Fly Bactrocera oleae Using Artificial Life Technique. In “Computacional Intelligence and Control”, m Mohammadian, RA Sarker, Xin Yao (Edts), Chapter XI, pp 183-196, Idea Group Publishing, 2003. ISBN: 1-591-40-037-6, 2003.

Conference Proceeding¶

2. [112C] Rogerio Largo, Agostinho C. Rosa. “Sleep EEG Processing with Wavelets”, Proc 7th Portuguese Conference on BioEng 2003, CD-Rom.

3. [113C] Pedro Gouveia, Ricardo Oliveira, Agostinho C. Rosa. “Sleep Apnea related micro arousal detection with EEG Analysis”, Proc 7th Portuguese Conference on BioEng 2003, CD-Rom.

4. [114C] HongFei G, Fernando Contreiras, Nuno Costa, Agostinho C. Rosa. Simulation model of olive fly population dynamics and Adaptation by Genetic Algorithms. Proc IASTED IC on ASM, pp 169-174, 2003.

5. [115C] AV Cruz, AC Pimentel, CC Rosa, AC Rosa. Characterization of Yogi Meditation Stages by EEG. Proc IASTED IC Biomedical Engineering, BIOMEd’03, pp 27-32, 2003.

6. [117C] Agostinho C. Rosa. Solving Puzzles and Games by Evolutionary Algorithms. Proc Mathematical Techniques and Problems in Telecomunnications, CIM 24, pp 281-312, 2003.

Journal Abstract (1AR)¶

7. [AR] Cyclic Alternating Pattern and Fatigue, Christian Guilleminault, Dalva Poyares, Agostinho C. Rosa, Sleep, S-1, 77, 2003.

PhD Thesis¶

8. [2D] Representação e Reconhecimento de Objectos Visuais , Tito Livio Silva, Instituto Superior Tecnico – Lisbon – Portugal, 2003.

MSc Thesis¶

9. [7M] Evolutionary Taboo Search Algorithm in Jobshop Schedulling, João Caldeira, Instituto Superior Técnico, Lisboa, Portugal, 2003.

2002 ( 13 = 5R – 6L – 2C)¶

Journal Paper¶

1. [105R] D. Poyares, C.Guilleminault, A. Rosa. “Sleep and EEG power spectrum in post encephalitis hypersomnia: a case report”. Sleep Medicine 3 (2002) 155-158.

2. [106R] MG Terzano, L Parrino, A Rosa, V Palomba, A Smerieri. “CAP and arousals in the structural development of sleep: an integrative perspective”. Sleep Medicine 3 (2002) May 3(3), pp 221-229. GSC = 15

3. [109R] MG Terzano, L Parrino, A Smerieri, R Chervin, S Chokroverty, C Guilleminault, M Hirshkowitz, M Mahowald, H Moldofsky, A Rosa, R Thomas, A Walters. “Atlas, rules and recording techniques for the scoring of cyclic alternating pattern (CAP) in human sleep”. Sleep Medicine, 3:187-199, 2002, second edition. GSC = 83

4. [110R] D Poyares, C Guilleminault, AC Rosa, M Ohayon, U Koester. “Arousal, EEG Spectral Power and Pulse Transit Time in UARS and Mild OSAS Subjects”. Clinical Neurophysiology 113 (10) : 1579, 2002. C = 18

5. [111R] Alexandre Calapez, Henrique M Pereira, Angelo Calado, José Braga, José Rino, Célia Carvalho, João Paulo Tavanez, Elmar Wahle, Agostinho C Rosa, Maria Carmo-Fonseca. “The intranuclear mobility of messenger RNA binding proteins is ATP dependent and temperature sensitive”. Journal of Cell Biology, Volume 159, Number 5, December 9 , 2002, pp 795-805. C = 49, GSC = 62

Book Chapter¶

6. [100L] Tito Silva, Agostinho C. Rosa. “Visual Objects Representation using Features Network”. In “Advances in Neural Networks World”, A Grmela, N Mastorkis (Eds), pp 123-129, WSEAS Press, 2002.

7. [101L] Cristian Munteanu, Agostinho C. Rosa. “Adaptive Reservoir Genetic Algorithm: Convergence Analysis”. In “Advances in Intelligent Systems, Fuzzy Systems, Evolutionary Computation”, A Grmela, N Mastorkis (Eds), pp 235-238, WSEAS Press, 2002.

8. [102L] Fernandes C, Caldeira JP, Rosa AC. "Infected Genes Evolutionary Algorithm for School Timetabling", In “Advances in Intelligent Systems, Fuzzy Systems, Evoluitionary Computation”, A Grmela, N Mastorkis (Eds), pp 245-249, WSEAS Press, 2002.

9. [103L] Cristi Munteanu, Agostinho C. Rosa. “Adaptive Reservoir Genetic Algorithm with on-line decision making”, PPSN VII, Lectures Notes in Computer Science 2439, pp 432-441, Springer-Verlag, 2002.

10. [104L] Antonio Grilo, Artur Caetano, Agostinho C. Rosa. Immune System Simulation through a Complex Adaptive System Model. Em Springer Engineering Series, Soft Computing in Industrial Applications - Recent Advances, Eds. R. Roy, M. Koppen, S. Ovaska, T. Furuhashi, F. Homann Springer Engineering Series, 681-704, 2002 GSC = 7.

11. [142L] Hongfei Gong, Agostinho C. Rosa. Simulation of Olive Fly Development Using Artificial Life Technic. “Computational Intelligence and Control”. M Mohammadian (Edt), Chapter XI, pp 183-196, 2002.

Conference Proceeding¶

12. [107C] Atila Neves, Osvaldo Brasao, Agostinho C. Rosa. “Learning the Risk board Game with Classifier Systems”. Proc. ACM SAC’02, pp 585-589, 2002.

13. [108C] Tito Silva, Agostinho C. Rosa. “Representation, Recognition and Reconstruction of Objects through a Features Network”. Proc. IJCNN – WCCI, pp 1602-1607, 2002.

Journal Abstract¶

14. [AR] Are K Complexes and Delta Waves Different: A Mathematical Model and its Applications,Agostinho C. Rosa, D. L. Poyares, C. Guilleminault, U. Koster, Sleep vol 25, AS 2002, A414-A415, 2002

15. [AR] Automatic CAP Power Classification by Wavelet Transform, Rogério Largo, Agostinho C. Rosa, Journal of Sleep Research Vol.11, Supp 1, pp133, 2002

MSc Thesis¶

16. [5M] Algoritmos Evolutivos: Paradigma Infecção Genética, Rui Tavares, Instituto Superior Técnico, Lisboa, Portugal, 2002.

17. [6M] Population based Genetic Algorithms, Carlos Fernandes, Instituto Superior Técnico, Lisboa, Portugal, 2002

2001(14 = 4R – 10C)¶

Journal Paper¶

1. [95R] Cristian Munteanu, Agostinho C. Rosa. “Evolutionary Image Enhancement with User Behavior Modeling – Extended version”. Applied Computing Review, Vol 9, Number 1, pp:8-14, July 2001, ACM Press.

2. [96R*] MG Terzano, L Parrino, R Chervin, S Chokroverty, C Guilleminault, M Hirshkowitz, M Mahowald, H Moldofsky, A Rosa, R Thomas, A Walters. “Atlas, rules and recording techniques for the scoring of cyclic alternating pattern (CAP) in human sleep”. Sleep Medicine, 2:537-553, 2001.

3. [97R] C Carvalho, H Pereira, J Ferreira, C Pina, D Mendonça, M Carmo-Fonseca, AC Rosa. “Chromosomal G-dark Bands Determine the Spatial Organization of Centromeric Heterochromatin in the Nucleus”. Molecular Biology of the Cell, Vol. 12, 3563-3572, November 2001. C = 24

4. [98R] Bernhard Obermaier, Cristian Munteanu, Gert Pfurtscheller, Agostinho C. Rosa. ”Assymetric Hidden Markov Model Classification of Movement Potentials”. IEEE Trans. Systems Man and Cybernetics, Part C: Applications and Reviews. Vol 31, N 4, pp 536-540, Nov 2001. C = 4

Conference Proceeding¶

5. [86C] Cristian Munteanu, Agostinho C. Rosa. “Evolutionary Image Enhancement with User Behaviour Modeling”. Proceedings of the 16th ACM SAC 2001 Symposium, SAC’01, pp. 316-320, Las Vegas, Nevada.

6. [87C] Cristian Munteanu, Agostinho C. Rosa. “Evolving Order Statistics Filters for Image Enhancement”. Proceedings of the International Conference on Artificial Neural Networks and Genetic Algorithms, ICANNGA 2001, pp 288-291, Prague, Czeck Republic.

7. [88C] Carlos Fernandes, Agostinho C. Rosa. “A Study on Non-random Mating and Varying Population Size in Genetic Algorithms using a Royal Road Function”. Proceedings of the 2001 IEEE Congress on Evolutionary Computation, CEC’01, pp. 60-66, Seoul, South Korea.

8. [89C] Gong HongFei, Agostinho C. Rosa. “Simulation of Olive Fly’s Development Using Artificial Life Technique”. Proceedings of CIMCA 2001, Las Vegas 2001, pp 614-620, ISBN 0858898470.

9. [90C] A Grilo, A Caetano, A Rosa. “Agent Based Artificial Immune System”. Proceedings of GECCO 2001, Last Breaking Papers, pp. 145-151, San Francisco, California. .

10. [91C] R Tavares, A Rosa. “Biased Genotype Variation in Evolutionary Algorithms
using Phenotype Information”. Proceedings of GECCO 2001, Last Breaking Papers, pp. 421-428, San Francisco, California..

11. [92C] Cristian Munteanu, Agostinho C. Rosa. “Color Image Enhancement using Evolutionary Principles and the Retinex Theory of Color Constancy”. Proc Neural Networks and Signal Processing – Proceedings of XIth Workshop NNSP 2001; Softcover; ISBN 0-7803-7196-8; Product No.: TH8584-TBR, pp: 393-402.

12. [93C] Agostinho C. Rosa, Nuno Lopes, Pedro Silva. “Lift Controllers by Evolutionary Algorithms”. Proceedings of the IFAC Conference on New Technologies for Computer Control, Proc NTCC 2001, pp 221-226, HongKong, PR China.

13. [94C*] A Grilo, A Caetano, A Rosa. “Immune System Simulation through a Complex Adaptive System Model”. 6th On-line World Conference on Soft Computing in Industrial Applications 2001 - WSC6. Pap:043. http://kolmogorov.ipk.fhg.de/wsc6/sessions/index.php3

14. [99C] Carlos Fernandes, Rui Tavares, Cristian Munteanu, Agostinho C. Rosa. “Using Assortative Mating in Genetic Algorithms for Vector Quantization Problems”. Proceedings of the 16th ACM SAC 2001 Symposium, SAC’01, pp. 361-365, Las Vegas, Nevada.

PhD Thesis¶

15. [1D] Design and Implementation of EEG based Virtual Keyboard using Hidden Markov Model. Bernhard Obermaier. Supervisor: Prof. Gert Pfurtscheller. –Technical Univesity of Graz, Austria, 2001.

Journal Abstract¶

16. [AR] Heart Rate Variability during sleep-disordered breathing in UARS and OSAS subjects, D.L. Poyares, Agostinho C. Rosa, C. Guilleminault, U. Koster, Sleep, Vol 24, pp A272, (Abs), 2001.

Technical report¶

17. [T] Alinhamento de Proteínas utilizando Algoritmos Genéticos, Nelson Perdigão, Former Report of Project PRODEP III / Take 3 / Action 3.2, 2001.

Other¶

18. [S] SOFIA - Sequences by Objective Function In a genetic Algorithm, Nelson Perdigão, Diploma Thesis, Instituto Superior Técnico, Lisbon, Portugal, 2001

2000 (9 = 3L – 6C)¶

Book Chapter¶

1. [82L] Fernando Melício, Paulo Caldeira , Agostinho C. Rosa. "Solving the TimeTabling problem with Simulated Annealing". Em Enterprise Information Systems, Joaquim Filipe (Edt), pp:171-178, Kluwer Academic Publisher 2000.

2. ­[83L+] TPaiva, C Guilleminault, T Sagalés, M Billiard, J Zulley, MJ Challamel, J Louis, A Besset, P Philip, P Levy, A Rosa, T Penzel. “The Sleep Tutorial”. In European Neurological Network, TPaiva, T Penzel (edt), pp:193-106, Technology and Informatics 78, IOS Press, 2000.

3. [84L] A Rosa. “Multimedia Tutorial Guide - Sleep Tutorial Implementation”. In European Neurological Network, TPaiva, T Penzel (edt), pp:161-192, Technology and Informatics 78, IOS Press, 2000.

Conference Proceeding¶

4. [77C] C Fernandes, R Tavares, AC Rosa. "niGAVaPS - Outbreeding in Genetic Algorithms”, Evolutionary Algorithms and Optimization Track – Proceedings of the 2000 ACM Symposium on Applied Computing, SAC’00, Vol. 1. pp. 477-482, Villa Olmo, Italy.

5. [78C] A David, P Aguiar, S Paulo, AC Rosa. "EEG Solver – Brain activity and Genetic Algorithms”, Biomedical Engineering Track. Proceedings of the 2000 ACM Symposium on Applied Computing, SAC’00, Vol. 1, pp. 80-84, Villa Olmo, Italy.

6. [79C] Cristian Munteanu, Agostinho C. Rosa. “Symmetrical Building Blocks and the Simple Inversion Operator”. Proceedings of the Genetic and Evolutionary Computation Conference, GECCO 2000, pp. 365, Las Vegas, Nevada.

7. [80C] M Marques, V Oliveira, S Vieira, AC Rosa. “Music Composition using Genetic Evolutionary Algorithms”. Proceedings of the IEEE Conference on Evolutionary Computation 2000, CEC’00, Vol. 1, pp. 714-719, San Diego, USA.

8. [81C] C Munteanu, A Rosa. “Towards Automatic Image Enhancement using Genetic Algorithms”. Proceedings of the IEEE Conference on Evolutionary Computation 2000, CEC’00, Vol. 2, pp. 1535-1542, San Diego, USA.

9. [85C] Ernesto Soares, Cleide Costa, David Palma, Agostinho C. Rosa. “Cell Cluster Dynamics Simulator”. Proceedings do VI Congresso Nacional de Mecânica Aplicada e Computacional, pp 1-9, Aveiro, Portugal 2000.

Journal Abstract¶

10. [AR] Sleep and PTT in UARS and OSA Patients, D Poyares, C Guilleminault, Agostinho C. Rosa, U. Koster, D. G. Jeong, J. of Sleep Research, Vol.9, S1, pp156, 2000

11. [AR] Automatic CAPS Classification by Wavelet Transform, Rogério Largo, Agostinho C. Rosa, Journal of Sleep Research, Vol.9, S1, pp109, 2000

1999 (22 = 1R – 21C)¶

Journal Paper¶

1. [75R] AC Rosa, L Parrino, M Terzano. "Automatic Detection of Cyclic Alternating Pattern (CAP) Sequences in Sleep: preliminary results". Electroencephalography and Clinical Neurophysiology, 110/4 pp 585-592, 1999. C = 10

Conference Proceeding¶

2. [56C] Elvino Rodrigues, Egidio Guedes, Agostinho C. Rosa. “Gestor de Tráfego de Elevadores”, Actas do 4º Encontro do Colégio de Engenharia Electrotécnica - ENCEE, pp:34-42, Lisboa, Portugal 1999.

3. [57C] Alberto Vale, Nuno Antunes, Agostinho C. Rosa.”Algoritmos Genéticos na procura de raízes de funções”, Actas do 4º Encontro do Colégio de Engenharia Electrotécnica - ENCEE, pp:21-26, Lisboa, Portugal 1999.

4. [58C] L Bento, L Pereira, AC Rosa. “Mastermind by Evolutionary Algorithms”. Proceedings of the 1999 ACM Symposium on Applied Computing, SAC’99, pp 307-311, San Antonio, Texas 1999.

5. [59C] R Tavares, P Silva, A Teófilo, AC Rosa. “Infected Genes Evolutionary Algorithm”, Proceedings of the 1999 ACM Symposium on Applied Computing, SAC’99, pp 333-338, San Antonio, Texas 1999.

6. [60C] C Fernandes, JP Caldeira, F Melicio, AC Rosa. “High School Weekly Timetabling by Evolutionary Algorithms”. Proceedings of the 1999 ACM Symposium on Applied Computing, SAC’99, pp 344-350, San Antonio, Texas 1999.

7. [61C] J Araújo, P Bernardo, AC Rosa. “A Genetic Learning Algorithm applied to Financial Forecasting”. Proceedings of the 14th World Congress of International Federation of Automatic Control - IFAC, Vol. M, pp.117-121, Beijing, China 1999.

8. [62C] Soares E, Costa C, Relógio A, Rosa AC. “Brain Tumor Growth Simulation by Cellular Agent”. Proceedings of the Second International Symposium on Artificial Intelligence - Adaptive Systems, ISAS’99, pp 228-235, Havana, Cuba1999.

9. [63C] Tang A, Moura A, Rosa AC. “Using Genetic Algorithms in the Game Five-in-Line (Go-moku)”, Proceedings of the Second International Symposium on Artificial Intelligence - Adaptive Systems, ISAS’99, pp 167-173, Havana, Cuba 1999.

10. [64C] AC Rosa. "Simulação do Electroencefalograma Humano". Proceedings do SEMNI’99, Simulation and Numerical Modeling, pp. 1-11, Sevilha, Espanha 1999.

11. [65C] Mendes P, Menano J, Rosa AC. "Traffic Simulation of Large Regions". Proceedings of the 1st International Conference on Enterprise Information Systems, ICEIS’ 99, pp 761, 1999.

12. [66C*] F Melício, P Caldeira , A Rosa. "Solving the TimeTabling problem with Simulated Annealing". Proceedings of the 1st International Conference on Enterprise Information Systems, ICEIS’ 99, pp 272-279, Setúbal, Portugal 1999.

13. [67C] Fernandes C, Caldeira JP, F Melicio, Rosa AC. "Evolutionary Algorithm for School Timetabling", Proceedings of the Genetic and Evolutionary Computation Conference, GECCO’99, Vol. 2, pp.1777, Orlando, Florida 1999.

14. [68C] Mota C, Ferreira H, Rosa AC. "Independent and Simultaneous Evolution of Fuzzy Sleep Classifiers by Genetic Algorithms". Proceedings of the Genetic and Evolutionary Computation Conference, GECCO’99, Vol. 2, pp. 1622-1629, Orlando, Florida 1999.

15. [68C] A Rosa. "Unified Simulation Model of the Scalp EEG". Proceedings of the 13th European Simulation Multiconference, Modelling and Simulation: A tool for the next millennium, ESM’99, Vol. II, pp. 538-542, Warsaw, Poland.

16. [69C] IG Pinto, VS Monteiro, A Rosa. "Distributed Genetic Algorithms using DLL", Proceedings of the 1999 IEEE International Conference on Systems, Man and Cybernetics, SMC’99, Vol. VI, pp 683-688, Tokyo, Japan.

17. [70C] João Costa, Rui Tavares, Agostinho C. Rosa. “An Experimental Study on Dynamic Random Variation of Population Size”. Proceedings of the 1999 IEEE International Conference on Systems, Man and Cybernetics, SMC’99, Vol. VI, pp. 607-612, Tokyo, Japan.

18. [71C] S Oliveira, P Gonçalves, AC Rosa. “Hypnos Graphic Interface: A Sleep Analysis Tool”. Proceedings of the 1999 IEEE International Conference on Systems, Man and Cybernetics, SMC’99, vol. VI, pp 376-381, Tokyo, Japan.

19. [72C] C Fernandes, R Tavares, AC Rosa, “niGAVaPS – A non-incest extension to the Genetic Algorithm with Varying Population Size. Proceedings of the Evonet Summer School Symposium, Antwerp, Belgium 1999.

20. [73C] S Oliveira, P Gonçalves, J Costa, AC Rosa. “Hypnos Sleep Analyser”, Proceedings MDIMD’99, Warsaw, Poland. E Em BioCybernetic and Biomedical Engineering, 1999.

21. [74C] Santos TO, Caetano R, Moniz J, Rosa AC. "Classification of Movement Cognitive Potentials from EEG". Proceedings of IEEE BMES/EMBS’99, Atlanta, Georgia..

22. [76C] Bernardo Motta, Paulo Inacio, Agostinho C. Rosa. “Simulação da Evacuação de um Edifício em Chamas”. Actas do 4º Encontro do Colégio de Engenharia Electrotécnica - ENCEE pp:27-33, Lisboa, Portugal 1999.

Msc Thesis¶

23. [4M] Construção e aracteruzacai de fonte de raios-X ultra-curtos com base em plasmas produzidos por lasers intensos. Carla Susana Santana Carmelo Rosa. Orientador: Tito Mendoça. Mestrado em Engenharia Fisica e Tecnologica do IST, 1999.

Journal Abstract¶

24. [AR] Automatic Detection of Cyclic Alternating Pattern Sequence (CAPS) in Sleep EEG, Agostinho C. Rosa, L. Parrino, A. Smerieri, M. Terzano, Sleep, Vol. 22, Supp 1, pp. 44, 1999.

Technical Report¶

25. [T] LLi - Log Likelihood Integrated Feedback Strength, Agostinho C. Rosa, ISR Internal Report 99.03, 1999.

26. [T] Redes Bayesianas, P. Ferreira, ISR Internal Report 99.01, 1999.

27. [T] Estrutura da Base de Sinais - Interface Gráfica do Projecto Hypnos, S. Oliveira, P. Gonçalves, ISR Internal Report 99.04, 1999.

28. [T] Hypnos Graphic Interface - Manual do Utilizador, S. Oliveira, P. Gonçalves, ISR Internal Report 99.06, 1999

29. [T] EPI Implementation, Cleide Costa, João Costa, Agostinho C. Rosa, ISR Internal Report 99.07, 1999

30. [T] Automatic Classification of CAPS on EDF Files - Users Manual for CMS, Agostinho C. Rosa, ISR Internal Report 99.08, 1999

31. [T] Visual Classification of CAPS Power and MacroStructure R&K on EDF Files, Agostinho C. Rosa, A. Smerieri, ISR Internal Report 99.09, 1999

32. [T] Automatic Classification of CAPS on EDF Files - Technical Report, Agostinho C. Rosa, ISR Internal Report 99.10, 1999.

1998 (15 = 3R – 1L – 11C)¶

Journal Paper¶

1. [50R] JC Costa e AC Rosa. “Artificial Life Modeling for Downy Mildew of the Grapevine”, Journal of Zhejiang Agricultural University 24(5), pp 509-516,1998.

2. [52R] Ferreira PM, Silva TL, Rosa AC. "Real-Time Application of Active Noise Control: Cost Analysis and Implementation". IST Science & Technology. Nº3, pp 3-7, 1998.

3. [53R] C Costa, E Soares, A Bento, J Costa, AC Rosa. "Modelo Preliminar da Mosca da Azeitona - Bactrocera Oleae (Gmelin) por técnicas de vida artificial", Revista de Ciências Agrárias, Vol XXI, 1-4, pp:221-30, 1998.

Book Chapter¶

4. [51L] A Caetano, A Grilo, A Rosa. “Modeling thymic selection and concomitant immune responses on CD4+ T lymphocyte sub-populations”. ALIFE VI, C Adami, R Belew, H Kitano, C Taylor (eds), pp 143-150, MIT Press, 1998.

Conference Proceeding¶

5. [43C] N Silva, H Macedo, AC Rosa. “Evolutionary Fuzzy Neural Networks: Automatic Design of Rule Based Controllers of Nonlinear Delayed Systems”, Proceedings IEEE World Congress on Computational Intelligence, WCCI’98, FUZZ-IEEE’98, pp 1271-1276, Anchorage, Alaska 1998.

6. [44C] J Allen Lima, AC Rosa. “Classification of Microstructure of Human Sleep using EEG modeling”. Signal Processing IX, Theories and Applications, EUSIPCO’98, Vol. IV pp 2433-2436, Island of Rhodes, Greece.

7. [45C] N Martins, AC Rosa. “Discrete-time equivalents of linear systems driven by white noise”. Signal Processing IX, Theories and Applications, EUSIPCO’98, Vol. IV, pp 2385-2388, Island of Rhodes, Greece.

8. [46C] E Soares, C Costa, A Bento, J Costa, A Rosa. “Artificial Life Model for Olive Fly – (Gmelin) ”. IEEE - Systems Science and Systems Engineering, Jifa Gu (Edt), ICSSSE’98, pp. 185-190, Beijing, China 1998.

9. [47C] F Melicio, P Caldeira, A Rosa. “Timetabling Implementation Aspects by Simulated Annealing”. IEEE - International Conference on Systems Science and Systems Engineering, Jifa Gu (Edt), ICSSSE’98, pp. 553-557, Beijing, China 1998.

10. [48C] P Tabuada, P Alves, J Gomes, AC Rosa. "3D Artificial Art by Genetic Algorithms". Fifth International Conference on Artificial Intelligence in Design - AID' 98. Workshop 1 notes - Evolutionary Design, pp. 18-21, Lisbon, Portugal 1998.

11. [49C] AC Rosa, C Costa, E Soares, j Costa. “Artificial Life Models in Crop Integrated Management”, Comunicação Convidada para o International Conference on Pest and Pesticide Management for Sustainable Agriculture - ICPPMSA – 98, Kampur, India 1998.

12. [54C] N Silva, H Macedo, AC Rosa. “Evolutionary Fuzzy Neural Networks: application to function approximation”, Proceedings of the 10th Portuguese Conference on Pattern Recognition, RecPad’98, pp 253-260, Lisboa, Portugal 1998.

13. [55C] J Allen Lima, AC Rosa. “Maximum Likelihood Based Classification for the Microstructure of Human Sleep”. Proceedings of the 1998 ACM Symposium on Applied Computing, SAC’98, Biomedical Engineering Track, pp 60-64, Atlanta, Georgia. ISBN:0-89791-969-6. http://doi.acm.org/10.1145/330560.330571

Journal Abstract¶

14. [AR] Sleep EEG Patterns and the Prediction REM, A. Fred, T. Paiva, A. Leitão, Agostinho C. Rosa, Journal Sleep Research, 7, Supplement 2, pp. 92, art. 184, 1998

15. [AR] Automatic CAPS Classification by Segmentation of Sleep EEG, Rogério Largo, Agostinho C. Rosa, Journal of Sleep Research 7, Supplement 2, pp. 147, art. 293, 1998

16. [AR] Fuzzy Classification of CAPS Dynamics of Human Sleep, Agostinho C. Rosa, J. Allen Lima, Journal of Sleep Research 7, supplement 2, pp. 230, art. 459, 1998.

17. [AR] Sleep EEG Patterns and the Prediction REM, A. Fred, T. Paiva, A. Leitão, Agostinho C. Rosa, Journal Sleep Research, 7, Supplement 2, pp. 92, art. 184, 1998.

MSc Thesis¶

18. [2M] Classificação Automática da Macro e Microestrutura do EEG do Sono, José Miguel Allen Lima, dissertation for the M.Sc. degree on Electrical and Computer Engineering, IST-UTL, 1998.

19. [3M] Modelação da Estrutura de Larga Escala da Cromatina durante a Interfase, Henrique Miguel de Freitas Pereira, dissertation for the M.Sc. degree on Electrical and Computer Engineering, IST-UTL, 1998.

1997 (7 = 1R – 1L – 5C)¶

Journal Paper¶

1. [38R] J Allen Lima, AC Rosa. “Maximum Likelihood Based Classification for the Microstructure of Human Sleep”. ACM SigBio Newsletter, Vol.17 Issue 3, Dec 97.

Book Chapter¶

2. [37L] N Martins, AC Rosa. “Selective Linear Prediction for Rhythmic Activity Modelling”. Em Spatiotemporal Models in Biological and Artificial Systems, Ed. FH Lopes da Silva, pp 105-112, IOS Press, Amsterdam, 1997.

Conference Proceeding¶

3. [39C] N Silva, H Macedo, AC Rosa. “Adaptive Structure Learning of Neural-Fuzzy Systems: Application to function approximation”, Proceedings of the 5th European Congress on Intelligent Techniques and Soft Computing, EUFIT’97, Vol. 2 pp 1094-1098, Aachen, Germany 1997.

4. [40C] JP Caldeira, AC Rosa. “School Timetabling using Genetic Search”, Proceedings of the 2nd International Conference on the Practice and Theory of Automated Timetabling, PATAT’97, pp 115-122, Toronto, Canada, 1997.

5. [41C+] Ferreira Pedro MA, Silva Tito LS, Rosa AC. “Controlo Activo de Ruído”, Proceedings da TecniAcústica 97, pp 191-194, Oviedo, Espanha 1997.

6. [42C] AC Rosa, Mourinha L, Gomes C, F Alves, J Costa. “PALM, Modelo Epidemiológico do Míldio da Videira”, Proceedings do IV Encontro Nacional de Protecção Integrada, pp 93-101, Angra do Heroísmo, Açores, 1997.

7. [NP] N Silva, H Macedo, A Rosa. Evolutionary Fuzzy Neural Networks Application to Function Approximation. Proc Int. Aust. Joint Conf on AI, Perth, 1997.

Msc Thesis¶

8. [1M] Modelação Estocástica do EEG em tempo discreto. Nuno Miguel Lara Cintra Martins, dissertation for the M.Sc. degree on Electrical and Computer Engineering, IST-UTL, 1997.

1996 (15 = 2R – 1 L – 12C)¶

Journal Paper¶

1. [28R?] T Paiva, K Blinowska, J Zygierewicz, M Kaminski, E Guimarães, A Rosa. “Topographical Covariance Structure of Sleep EEG During Stage 2: A Comparison between stable and pre Rem Epochs”, Electroencephalography and Clinical Neurophysiology, 1996.

2. [29R+] AC Rosa. “Analisi Automática del Cyclic Alternating Pattern”. Em Il Sonno in Itália 95, pp 131- 136. Polleto Edizioni 1996.

Book Chapter¶

3. [30L] N Gracias, H Pereira, J Allen Lima, A Rosa. “Gaia: An artificial life environment for ecological systems simulation”. Em Artificial Life V, ed. C Langton & K Shimohara, pp 124-131, MIT Press, 1996.

Conference Proceeding¶

4. [22C] L Rodrigues, M Prado, P Tavares, K Silva, A Rosa.”Simulation and control of Biped Locomotion - GA Optimization”, Proceedings of the 1996 IEEE International Conference on Evolutionary Computation, ICEC’96, pp 390-395, Nagoya, Japan 1996.

5. [23C] J Allen Lima, N Gracias, A Rosa. “Real-time ECG Acquisition and Processing”. Proceedings of the 13th International Conference BioSignal’96 Analysis of Biomedical Signals and Images, pp 186-188, Technical University Brno Press, 1996.

6. [24C+] H Pereira, N Gracias, J Allen Lima, A Rosa. “Solving the XOR problem using Genetic Algorithms and Unsupervised Learning”, Proceedings of the World Congress Neural Networks, WCNN’96, pp 568-573, INNS Press, San Diego, California1996.

7. [25C] N Martins, AC Rosa. “EEG Non - Stationary Spectrum Analysis and Feature Extraction”. Proceedings of the 1996 IEEE International Conference on Systems, Man and Cybernetics – Information, Intelligence and Systems, SMC’96 Vol. 2 pp 881-886, Beijing, China 1996.

8. [26C] AC Rosa, J Allen Lima. “Fuzzy classification of Microstructural Dynamics of Human Sleep”. Proceedings of the 1996 IEEE International Conference on Systems, Man and Cybernetics – Information, Intelligence and Systems, SMC’96 Vol. 2, pp 1108-1113, 1996.

9. [27C*] N Gracias, H Pereira, J Allen Lima, A Rosa. “Gaia: An artificial life environment for ecological systems simulation”, Proceedings ALIFE V, pp 105-112, Nara, Japan 1996.

10. [31C] P Encarnação, J Peralta, F Vendas, L Azevedo, AC Rosa. “Detector de Proximidade de Obstáculos”, Proceedings do 4º Congresso Português de Engenharia Biomédica, BioEng’96, pp. III.5.1-5, Aveiro, Portugal 1996.

11. [32C] H Pereira, C Marques, J Allen Lima, N Gracias, AC Rosa. “Remote Control of EEG Acquisition”. Proceedings do 4º Congresso Português de Engenharia Biomédica, BioEng’96, pp VII.5.1-5, Aveiro, Portugal 1996.

12. [33C] N Martins, AC Rosa. “Filter Estimation and EEG modeling”, Proceedings do 4º Congresso Português de Engenharia Biomédica, BioEng’96, pp II.3.1-5, Aveiro, Portugal 1996.

13. [34C+] L Rodrigues, M Prado, P Tavares, K Silva, P Lima, A Rosa.”Neural Network Based Control of Biped Locomotion, Genetic Algorithm Optimization”, Proceedings of the 2nd Portuguese Conference on Automatic Control, Controlo’96, pp 815-820, Porto, Portugal 1996.

14. [35C] L Mourinha, Z Carvalhais, J Alves, A Rosa. “PALM - Predictor da Vida Artificial do Míldio da Videira: Região do Douro”. Proceedings da 1ª Reunião da Sociedade Portuguesa de Fitopatologia, pp 34-37, Vila Real, Portugal 1996

15. [36C] J Allen Lima, N Gracias, H Pereira, A Rosa. “Fitness Function Design for Genetic Algorithms in Cost Evaluation Based Problems”, Proceedings of the 1996 IEEE International Conference on Evolutionary Computation, ICEC’96, pp 207-212, Nagoya, Japan 1996.

1995 (4 = 1R – 3C)¶

Journal Paper¶

1. [21R+] A Varri, B Kemp, A Rosa, K Nielsen, J Gade, T Penzel, J Hasan, K Hirvonen, V Hakkinen, HAC Kamphuisen, MS Mourtazaev. "Multi-Center Comparison of Five Eye Movement Detection Algorithms". Em Journal of Sleep Research, 4, pp 119-130, 1995. C = 7.

Conference Proceeding¶

2. [18C] A Rosa. “Stochastic Model of Evoked Responses in Sleep”, Proceedings of the 7th International IMEKO TC-13 Conference on Measurement in Clinical Medicine - MBB’95, pp 40-42, Stará Lesna, Slovak Republic 1995.

3. [19C] J Soares, AC Rosa. “Optimum estimator for the EEG ToPE Model”, Proceedings of the 7th International IMEKO TC-13 Conference on Measurement in Clinical Medicine - MBB’95, pp 177-180, Stará Lesna, Slovak Republic 1995.

4. [20C+] N Martins, C Matos, F Freire, A Rosa, T Paiva. “Automatic sleep scoring of EEG recordings using fuzzy logic”, Proceedings of the 7th International IMEKO TC-13 Conference on Measurement in Clinical Medicine - MBB’95, pp 170-173, Stará Lesna, Slovak Republic 1995.

1994 (4 = 2L – 2C)¶

Book Chapter¶

1. [14L+] A Fred, A Rosa, J Leitão. "Predicting REM in sleep EEG using a structural approach". em Pattern Recognition in Practice IV, ed. E Gelsema e L Kanal, North- Holland, pp 107- 117, 1994.

2. [17L+] T Paiva, A Rosa. Sleep EEG charateristics after spontaneous Awakenings. In "Sleep onset: normal and Abnormal Processes", Robert Ogilvie e John Harsh (edt), American Psychological Association, Washington DC, ch.15, pp255-266, 1994.

Conference Proceeding¶

3. [15C] A Rosa, A Fred, J Nunes Leitão. "Stochastic Model of Awake and Sleep EEG". Proceedings of EUSIPCO-94, Signal Processing VII – Theories and Applications, pp. 896-899, Edinburgh, Scotland 1994.

4. [16C] J Soares, N Xavier, A Rosa. “Estimador ML e MAP do modelo ToPE do EEG”. Proceedings do Controlo-94, pp II-77-82, Lisboa, Portugal 1994.

1993 (2 = 2R)¶

Journal Paper¶

1. [12R] AC da Rosa, T Paiva. "Automatic Detection of K-complexes: Validation in Normals and Dysthymic Patients". Em Sleep, Vol.16, No.3, pp 239-248, 1993.

2. [13R+] T Paiva, F Arriaga, A Rosa, J Nunes Leitão. "Sleep Phasic Events in Dhysthymic Patients: A Comparative Study with Normal Controls". Em Physiology and Behaviour, vol 54, pp 819-824, 1993. C = 7

1992 (2 = 1R – 1L)¶

Journal Paper¶

1. [11R+] B Kemp, A Varri, A Rosa, K Nielsen, J Gade. "A simple format for exchange of digitized polygraphic recordings". Em Electroencephalography and Clinical Neurophysiology, 82:391-393,1992.C = 78 ( C = 106 Google Scholar))

Book Chapter¶

2. [10L+] JMN Leitão, AC Rosa. "Aspects of Complexity in Sleep Analysis". Em Complexity in Physics and Technology. Ed. V Mendes e M Garrido.World Scientific Publishing Co. Pte Ltd., pp 249-262, 1992.

1991 (4 = 1R – 2L – 1C)¶

Journal Paper¶

1. [9R] AC da Rosa, B Kemp, T Paiva, FH Lopes da Silva, HAC Kamphuisen. "A model-based detector of vertex waves and K complexes in sleep electroencephalogram". Em Electroencephalography and clinical Neurophysiology, 78:71-79,1991. C = 26 (G)

Book Chapter¶

2. [7L+] T Paiva, A Rosa. "The K-complex Variability in Normal Subjects". Em Phasic Events and Dynamic Organization of Sleep, ed. MG Terzano, PL Halasz e AC Declerck. Raven Press 167-184,1991.

3. [8L+] JFV Caekebeke, JG v. Dijk, AC Rosa e B Kemp. "A model relating K-complexes to Spontaneous Slow-Wave Activity during Sleep". Em Phasic Events and Dynamic Organization of Sleep, ed. MG Terzano, PL Halasz e AC Declerck. Raven Press 41-51,1991. C = 2 (G)

Conference Proceeding¶

4. [6C+] B Kemp, A Värri, A Rosa, K Nielsen, J Gade, T Penzel. "Analysis of brain synchronization, based on noise-driven feedback models". Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Vol.13, No.5, 2305-2306, 1991.

1988 (1 = 1R)¶

Journal Paper¶

1. [5R+] T Paiva, J Canas da Silva, T Pimentel, JC Romeu, AC Rosa, CM Rosa, A Fred, M Viana Queiroz. "Neurophysiological Tests in Neurolupus". Acta Médica Portuguesa, Vol. 1 nº. 4,5,6, pp.261-264, 1988.

1985 (2 = 1R – 1L)¶

Journal Paper¶

1. [3R+] R Largo, A Rosa, T Paiva, JMN Leitão. “Processamento de Sinais Biológicos. Resposta à Estimulação sonora”. Revista de Acústica, Vol.XVI-Números 1-2, pp35-38, 1985.

Conference Proceeding¶

2. [4C+] A Fred, P Lima, A Rosa. “AUTOMATON-Autómato programável”. Proceedings do Endiel-85, Porto, Portugal, pp2-11, 1985.

1984 (1 = 1C)¶

Conference Proceeding¶

1. [2C+] A Rosa, JMN Leitão, T Paiva. "An Acquisition and Processing System of Brain Evoked Potentials". Proceedings of the Morocco Workshop on Signal Processing and its Applications, MWSPA’84, A3 ppA3.2-3.8, 1984.

1983 (1 = 1C)¶

Conference Proceeding¶

1. [1C+] A Rosa, JG Coucelo, MM Praxedes. “Rede Transaccional”. Proceedings do 1º Workshop Nacional sobre Engenharia das Telecomunicações e dos Computadores, v2-1-48, Sesimbra, Portugal 1983.